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WormBase Tree Display for Gene: WBGene00012730

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Name Class

WBGene00012730EvidencePaper_evidenceWBPaper00006308
SMapS_parentSequenceY39G8C
IdentityVersion3
NameCGC_namexrn-1
Sequence_nameY39G8C.1
Molecular_nameY39G8C.1
Y39G8C.1.1
CE42924
Other_nameY39G8C.bCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
CELE_Y39G8C.1Accession_evidenceNDBBX284602
Public_namexrn-1
DB_infoDatabase (12)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:54WBPerson1971EventImportedInitial conversion from CDS class of WS125
217 Sep 2004 10:21:40WBPerson1971Name_changeCGC_namexrn-1
318 Jul 2008 16:44:00WBPerson1983EventAcquires_mergeWBGene00044055
Acquires_mergeWBGene00044055
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classxrn
Allele (737)
In_clusterconserved_miRNA_siRNA_cluster
RNASeq_FPKM (74)
GO_annotation (17)
Contained_in_operonCEOP2724
OrthologWBGene00057650Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00039750Caenorhabditis briggsaeFrom_analysisOrthoMCL
Inparanoid_8
WormBase-Compara
WBGene00160259Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00131647Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00190726Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00226747Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g7115Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g301Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g21835Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g1324Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g13661Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g4080Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g13622Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g2218Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g21449Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g17417Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g18430Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g21340Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g5631Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00163.g5998Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00163.g5999Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-xrn-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g19504Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_02248.g25617Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_06907Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_005744Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g01956Oscheius tipulaeFrom_analysisWormBase-Compara
Sp34_20064300Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g6478Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00206569Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00246558Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00110599Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00273808Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00273812Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00273814Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00301205Trichuris murisFrom_analysisWormBase-Compara
WBGene00301271Trichuris murisFrom_analysisWormBase-Compara
WBGene00301808Trichuris murisFrom_analysisWormBase-Compara
SGD:S000003141Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
FB:FBgn0020261Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-040426-1203Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:30654Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:891964Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
RGD:1309713Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ParalogWBGene00006964Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionConcise_descriptionxrn-1 encodes a 5'-3' exoribonuclease that is orthologous to Saccharomyces cerevisiae Xrnp1, a key component of the yeast 5'-3' mRNA degradation pathway; in C. elegans, XRN-1 activity is required during embryogenesis for completion of ventral enclosure, the morphogenetic process whereby the ventral epithelial cells cover and seal the interior cells of the embryo; in addition, XRN-1 also plays a role in facilitating RNA interference (RNAi), likely acting in the same pathway as the DCR-1/Dicer ribonuclease; to date, XRN-1 expression has been reported in adult hypodermal and rectal cells.Paper_evidenceWBPaper00006308
Curator_confirmedWBPerson1843
Date_last_updated21 Nov 2005 00:00:00
Automated_descriptionPredicted to enable 5'-3' RNA exonuclease activity and RNA binding activity. Involved in determination of adult lifespan and negative regulation of cytoplasmic mRNA processing body assembly. Predicted to be located in nucleus. Expressed in hypodermis and rectum. Human ortholog(s) of this gene implicated in Alzheimer's disease. Is an ortholog of human XRN1 (5'-3' exoribonuclease 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:10652Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:30654)
Molecular_infoCorresponding_CDSY39G8C.1
Corresponding_CDS_historyY39G8C.1:wp91
Y39G8C.1:wp193
Corresponding_transcriptY39G8C.1.1
Other_sequence (12)
Associated_featureWBsf990619
WBsf990620
WBsf990621
WBsf1013768
WBsf1013769
WBsf1013770
WBsf222422
WBsf222423
Experimental_infoRNAi_result (25)
Expr_patternExpr2827
Expr1028840
Expr1035633
Expr1159774
Expr2018110
Expr2036248
Drives_constructWBCnstr00010975
Construct_productWBCnstr00010975
AntibodyWBAntibody00002505
Microarray_results (22)
Expression_cluster (95)
Interaction (331)
Map_infoMapIIPosition22.401Error0.003133
PositivePositive_cloneY39G8CInferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Reference (19)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene