WormBase Tree Display for Gene: WBGene00012714
expand all nodes | collapse all nodes | view schema
| WBGene00012714 | SMap | S_parent | Sequence | Y39E4B | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | abce-1 | Paper_evidence | WBPaper00028961 | |||||
| Sequence_name | Y39E4B.1 | ||||||||
| Molecular_name | Y39E4B.1 | ||||||||
| Y39E4B.1.1 | |||||||||
| CE21713 | |||||||||
| Other_name | tag-351 | Person_evidence | WBPerson201 | ||||||
| CELE_Y39E4B.1 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | abce-1 | ||||||||
| DB_info | Database | AceView | gene | 3O249 | |||||
| WormQTL | gene | WBGene00012714 | |||||||
| WormFlux | gene | WBGene00012714 | |||||||
| NDB | locus_tag | CELE_Y39E4B.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00012714|UniProtKB=Q9U2K8 | |||||||
| family | PTHR19248 | ||||||||
| NCBI | gene | 176733 | |||||||
| RefSeq | protein | NM_067316.8 | |||||||
| TREEFAM | TREEFAM_ID | TF105206 | |||||||
| TrEMBL | UniProtAcc | Q9U2K8 | |||||||
| UniProt_GCRP | UniProtAcc | Q9U2K8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 21 Jun 2005 09:45:25 | WBPerson2970 | Name_change | CGC_name | tag-351 | ||||
| 3 | 21 Jun 2007 14:37:04 | WBPerson2970 | Name_change | CGC_name | abce-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | abce | ||||||||
| Allele (86) | |||||||||
| Strain | WBStrain00001519 | ||||||||
| WBStrain00036276 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00099349 | ||||||||
| 00099350 | |||||||||
| 00099351 | |||||||||
| 00099352 | |||||||||
| 00099353 | |||||||||
| 00099354 | |||||||||
| 00099355 | |||||||||
| 00099356 | |||||||||
| 00119744 | |||||||||
| 00119745 | |||||||||
| Contained_in_operon | CEOP3819 | ||||||||
| Ortholog (43) | |||||||||
| Structured_description | Automated_description | Predicted to enable ATP binding activity; iron ion binding activity; and ribosomal small subunit binding activity. Predicted to be involved in ribosomal subunit export from nucleus; translational initiation; and translational termination. Expressed in several structures, including muscle cell; neurons; and vulva. Human ortholog(s) of this gene implicated in breast carcinoma; carcinoma (multiple); and human immunodeficiency virus infectious disease. Is an ortholog of human ABCE1 (ATP binding cassette subfamily E member 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:3910 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:69) | ||||
| DOID:3459 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:69) | ||||||
| DOID:526 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:69) | ||||||
| DOID:684 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:69) | ||||||
| Molecular_info | Corresponding_CDS | Y39E4B.1 | |||||||
| Corresponding_transcript | Y39E4B.1.1 | ||||||||
| Other_sequence (91) | |||||||||
| Associated_feature | WBsf659692 | ||||||||
| WBsf659693 | |||||||||
| WBsf994820 | |||||||||
| WBsf1016332 | |||||||||
| WBsf225967 | |||||||||
| Experimental_info | RNAi_result (13) | ||||||||
| Expr_pattern | Expr3062 | ||||||||
| Expr4631 | |||||||||
| Expr4632 | |||||||||
| Expr6956 | |||||||||
| Expr1028843 | |||||||||
| Expr1035624 | |||||||||
| Expr1159723 | |||||||||
| Expr2009073 | |||||||||
| Expr2027309 | |||||||||
| Drives_construct | WBCnstr00002376 | ||||||||
| WBCnstr00012135 | |||||||||
| WBCnstr00012136 | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (118) | |||||||||
| Interaction (172) | |||||||||
| Map_info | Map | III | Position | 20.9522 | Error | 0.053739 | |||
| Positive | Positive_clone | Y39E4B | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5286 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00024370 | ||||||||
| WBPaper00028961 | |||||||||
| WBPaper00032322 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041771 | |||||||||
| WBPaper00046427 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
