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WormBase Tree Display for Gene: WBGene00012643

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Name Class

WBGene00012643SMapS_parentSequenceCHROMOSOME_III
IdentityVersion1
NameSequence_nameY39A1A.3
Molecular_nameY39A1A.3
Y39A1A.3.1
CE45493
Other_nameCELE_Y39A1A.3Accession_evidenceNDBBX284603
Public_nameY39A1A.3
DB_infoDatabaseAceViewgene3L682
WormQTLgeneWBGene00012643
WormFluxgeneWBGene00012643
NDBlocus_tagCELE_Y39A1A.3
PanthergeneCAEEL|WormBase=WBGene00012643|UniProtKB=G5EEN7
familyPTHR16537
NCBIgene176479
RefSeqproteinNM_066933.4
TREEFAMTREEFAM_IDTF320182
TrEMBLUniProtAccG5EEN7
UniProt_GCRPUniProtAccG5EEN7
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:54WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (28)
RNASeq_FPKM (74)
GO_annotation00016699
00016700
Contained_in_operonCEOP3684
Ortholog (22)
Structured_descriptionAutomated_descriptionEnriched in AFD; NSM; germ line; intestine; and neurons based on RNA-seq and microarray studies. Is affected by several genes including daf-2; skn-1; and glp-1 based on tiling array; proteomic; RNA-seq; and microarray studies. Is affected by six chemicals including rotenone; Rifampin; and allantoin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Sjoegren syndrome/scleroderma autoantigen 1 and Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). Is an ortholog of human ZNRD2 (zinc ribbon domain containing 2).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY39A1A.3
Corresponding_CDS_historyY39A1A.3:wp220
Corresponding_transcriptY39A1A.3.1
Other_sequence (21)
Associated_featureWBsf227476
Experimental_infoRNAi_resultWBRNAi00056114Inferred_automaticallyRNAi_primary
WBRNAi00022479Inferred_automaticallyRNAi_primary
WBRNAi00000396Inferred_automaticallyRNAi_primary
WBRNAi00062428Inferred_automaticallyRNAi_primary
WBRNAi00033436Inferred_automaticallyRNAi_primary
WBRNAi00006740Inferred_automaticallyRNAi_primary
Expr_patternExpr1013566
Expr1035584
Expr1159631
Expr2007348
Expr2025583
Microarray_results (19)
Expression_clusterWBPaper00031040:TGF-beta_adult_downregulated
WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00040209:B.thuringiensis_upregulated_MY15
WBPaper00040560:hpl-2_embryo_downregulated
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044736:flat_dev_expression
WBPaper00045521:Gender_Neutral
WBPaper00045974:NSM_enriched_totalRNA_RNAseq
WBPaper00046421:cdc-48.2(tm659)_upregulated
WBPaper00048923:Aging_regulated
WBPaper00048988:neuron_expressed
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00050344:AFD-neuron_enriched
WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050686:glp-1(e2141)_downregulated
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00051039:germline_enriched
WBPaper00051558:aging_regulated
WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
WBPaper00053388:dauer_regulated_Cluster6
WBPaper00053810:daf-2(e1370)_downregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055648:germline_expressed
WBPaper00056275:P.aeruginosa_downregulated
WBPaper00056275:P.aeruginosa_downregulated_atf-7(qd22qd130)_dependent
WBPaper00057288:Cold_downregulated_protein
WBPaper00057288:iff-1(RNAi)_downregulated_transcript
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058691:sin-3(tm1276)_downregulated
WBPaper00060811:L1_vs_adult_upregulated_neural
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061439:unc-30(ok613)_upregulated
WBPaper00061527:cids-2_2203-attf-2_2451
WBPaper00062193:skn-1(RNAi)_upregulated
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00064071:NHR-49_interacting
WBPaper00064716:paraquat_upregulated
WBPaper00065993:glp-1(e2141)_downregulated
cgc4489_group_12
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00030839:Embryo_Pan_Neuronal
WBPaper00034739:RIL17moreRIL14
WBPaper00035084:L2_enriched_AIN-2_IP
WBPaper00035084:L3_enriched_AIN-2_IP
WBPaper00035084:L4_enriched_AIN-2_IP
WBPaper00036123:Cadmium_regulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
[cgc5767]:cluster_15
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(83_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_MD
[cgc5767]:expression_class_MDE
[cgc5767]:expression_class_MD_pd(41_min)
[cgc5767]:expression_class_ME
[cgc6390]:mixed_oogenesis-somatic
Interaction (23)
Map_infoPositivePositive_cloneY39A1AInferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionIII3.80652
ReferenceWBPaper00038491
WBPaper00055090
MethodGene