WormBase Tree Display for Gene: WBGene00012615
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| WBGene00012615 | SMap | S_parent | Sequence | Y38H6C | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | dct-16 | Paper_evidence | WBPaper00031095 | |||||
| Person_evidence | WBPerson1157 | ||||||||
| Sequence_name | Y38H6C.1 | ||||||||
| Molecular_name | Y38H6C.1a | ||||||||
| Y38H6C.1a.1 | |||||||||
| CE19095 | |||||||||
| Y38H6C.1b | |||||||||
| CE44759 | |||||||||
| Y38H6C.1b.1 | |||||||||
| Other_name | CELE_Y38H6C.1 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | dct-16 | ||||||||
| DB_info | Database | AceView | gene | 5U968 | |||||
| WormQTL | gene | WBGene00012615 | |||||||
| WormFlux | gene | WBGene00012615 | |||||||
| NDB | locus_tag | CELE_Y38H6C.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00012615|UniProtKB=Q9XX57 | |||||||
| family | PTHR33272 | ||||||||
| NCBI | gene | 180345 | |||||||
| RefSeq | protein | NM_001380883.2 | |||||||
| NM_001269995.3 | |||||||||
| TREEFAM | TREEFAM_ID | TF318907 | |||||||
| TrEMBL | UniProtAcc | D4YWC3 | |||||||
| Q9XX57 | |||||||||
| UniProt_GCRP | UniProtAcc | Q9XX57 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 08 Nov 2007 16:33:50 | WBPerson2970 | Name_change | CGC_name | dct-16 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | dct | ||||||||
| Allele (46) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (13) | |||||||||
| Paralog (18) | |||||||||
| Structured_description | Automated_description | Enriched in several structures, including ABplapaaap; ABprapaaap; MSaaaaapa; head mesodermal cell; and neurons based on tiling array; RNA-seq; proteomic; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and pie-1 based on microarray; tiling array; RNA-seq; and proteomic studies. Is affected by eighteen chemicals including Cyclosporine; dimedone; and rotenone based on proteomic; RNA-seq; and microarray studies. Is predicted to encode a protein with the following domains: Domain of unknown function (DUF4473) and Protein of unknown function DUF4473. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y38H6C.1a | |||||||
| Y38H6C.1b | |||||||||
| Corresponding_transcript | Y38H6C.1a.1 | ||||||||
| Y38H6C.1b.1 | |||||||||
| Other_sequence | FD515820.1 | ||||||||
| FD514992.1 | |||||||||
| Tcir_isotig12796 | |||||||||
| CSC01400_1 | |||||||||
| CJC01292_1 | |||||||||
| FD516725.1 | |||||||||
| CBC00670_1 | |||||||||
| CRC03816_1 | |||||||||
| Associated_feature | WBsf653614 | ||||||||
| WBsf1003575 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00056060 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00020311 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1020696 | ||||||||
| Expr1035577 | |||||||||
| Expr1159583 | |||||||||
| Expr2010815 | |||||||||
| Expr2029052 | |||||||||
| Drives_construct | WBCnstr00029882 | ||||||||
| Construct_product | WBCnstr00029882 | ||||||||
| Microarray_results (31) | |||||||||
| Expression_cluster (301) | |||||||||
| Interaction (93) | |||||||||
| Map_info | Map | V | Position | 25.0039 | Error | 0.000384 | |||
| Positive | Positive_clone | Y38H6C | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031095 | ||||||||
| WBPaper00033099 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
