WormBase Tree Display for Gene: WBGene00012446
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| WBGene00012446 | SMap | S_parent | Sequence | Y17D7A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | nhr-230 | Person_evidence | WBPerson600 | |||||
| Sequence_name | Y17D7A.1 | ||||||||
| Molecular_name | Y17D7A.1 | ||||||||
| Y17D7A.1.1 | |||||||||
| CE40242 | |||||||||
| Other_name | CELE_Y17D7A.1 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | nhr-230 | ||||||||
| DB_info | Database | AceView | gene | 5T327 | |||||
| WormQTL | gene | WBGene00012446 | |||||||
| WormFlux | gene | WBGene00012446 | |||||||
| NDB | locus_tag | CELE_Y17D7A.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00012446|UniProtKB=O45905 | |||||||
| family | PTHR45680 | ||||||||
| NCBI | gene | 189442 | |||||||
| RefSeq | protein | NM_075280.4 | |||||||
| TREEFAM | TREEFAM_ID | TF315604 | |||||||
| TrEMBL | UniProtAcc | O45905 | |||||||
| UniProt_GCRP | UniProtAcc | O45905 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 22 Jul 2005 10:29:12 | WBPerson2970 | Name_change | CGC_name | nhr-230 | ||||
| 3 | 21 Apr 2006 10:12:05 | WBPerson4025 | Event | Acquires_merge | WBGene00012447 | ||||
| Acquires_merge | WBGene00012447 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (209) | |||||||||
| Strain | WBStrain00036774 | ||||||||
| WBStrain00036918 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00035583 | ||||||||
| 00035584 | |||||||||
| 00035585 | |||||||||
| 00035586 | |||||||||
| 00119570 | |||||||||
| 00119571 | |||||||||
| 00119572 | |||||||||
| 00119573 | |||||||||
| Contained_in_operon | CEOP5525 | ||||||||
| Ortholog (20) | |||||||||
| Paralog (218) | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y17D7A.1 | |||||||
| Corresponding_CDS_history | Y17D7A.1:wp158 | ||||||||
| Corresponding_transcript | Y17D7A.1.1 | ||||||||
| Other_sequence | PE00545 | ||||||||
| PT01789 | |||||||||
| MA03043 | |||||||||
| FC810692.1 | |||||||||
| MJ03898 | |||||||||
| GPC01244_1 | |||||||||
| JI475055.1 | |||||||||
| HC06417 | |||||||||
| Associated_feature | WBsf1003021 | ||||||||
| WBsf1003022 | |||||||||
| WBsf1003023 | |||||||||
| WBsf1021559 | |||||||||
| WBsf1021560 | |||||||||
| Transcription_factor | WBTranscriptionFactor000334 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00055558 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00020071 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00020070 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00055557 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1016998 | ||||||||
| Expr1159059 | |||||||||
| Expr2014131 | |||||||||
| Expr2032371 | |||||||||
| Microarray_results (28) | |||||||||
| Expression_cluster (101) | |||||||||
| Interaction | WBInteraction000199381 | ||||||||
| WBInteraction000238626 | |||||||||
| WBInteraction000273001 | |||||||||
| WBInteraction000286783 | |||||||||
| WBInteraction000294056 | |||||||||
| WBInteraction000344834 | |||||||||
| WBInteraction000353593 | |||||||||
| WBInteraction000399533 | |||||||||
| WBInteraction000461801 | |||||||||
| WBInteraction000527448 | |||||||||
| Map_info | Map | V | Position | 18.314 | Error | 0.047469 | |||
| Positive | Positive_clone | Y17D7A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5323 | |||||||
| 5346 | |||||||||
| 5607 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
