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WormBase Tree Display for Gene: WBGene00012257

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Name Class

WBGene00012257SMapS_parentSequenceW04G3
IdentityVersion2
NameCGC_namelpr-4Person_evidenceWBPerson637
Sequence_nameW04G3.3
Molecular_nameW04G3.3
W04G3.3.1
CE31627
Other_nameCELE_W04G3.3Accession_evidenceNDBBX284606
Public_namelpr-4
DB_infoDatabaseAceViewgeneXL685
WormQTLgeneWBGene00012257
WormFluxgeneWBGene00012257
NDBlocus_tagCELE_W04G3.3
PanthergeneCAEEL|WormBase=WBGene00012257|UniProtKB=Q23164
familyPTHR10612
NCBIgene181298
RefSeqproteinNM_077451.7
TREEFAMTREEFAM_IDTF315575
TrEMBLUniProtAccQ23164
UniProt_GCRPUniProtAccQ23164
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:53WBPerson1971EventImportedInitial conversion from CDS class of WS125
227 Nov 2007 14:51:19WBPerson2970Name_changeCGC_namelpr-4
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlpr
Allele (33)
StrainWBStrain00037481
RNASeq_FPKM (74)
GO_annotation00077485
00077486
OrthologWBGene00058355Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00037111Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00149391Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00108362Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00135185Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00226446Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g2589Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g1604Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g12194Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g14457Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g15898Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g10068Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g1376Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g20655Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g19646Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g6500Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00036.g2023Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-lpr-4Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold515.g2643Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00025.g1445Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_01199Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_023704Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g00493Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g11347Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_X0081700Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrX_pilon.g19999Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00241477Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00265748Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00288715Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00002393Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00012255Caenorhabditis elegansFrom_analysisPanther
WBGene00012256Caenorhabditis elegansFrom_analysisTreeFam
WBGene00012261Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
Structured_descriptionConcise_descriptionlpr-4 encodes one of seven C. elegans proteins related to the lipocalin family of structurally related, low molecular weight, secreted proteins that bind and transport lipophilic molecules and participate in intercellular signaling; loss of lpr-4 via RNAi has been reported to result in defective yolk endocytosis; lpr-4 appears to be expressed in body wall muscle.Paper_evidenceWBPaper00026629
WBPaper00030951
WBPaper00032973
Curator_confirmedWBPerson1843
Date_last_updated16 Aug 2011 00:00:00
Automated_descriptionPredicted to be involved in lipid transport. Predicted to be located in extracellular region. Expressed in body wall musculature and muscle cell.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSW04G3.3
Corresponding_CDS_historyW04G3.3:wp83
Corresponding_transcriptW04G3.3.1
Other_sequence (60)
Associated_featureWBsf648516
WBsf648517
WBsf663324
WBsf663325
WBsf236341
Experimental_infoRNAi_resultWBRNAi00026488Inferred_automaticallyRNAi_primary
WBRNAi00036280Inferred_automaticallyRNAi_primary
WBRNAi00000266Inferred_automaticallyRNAi_primary
WBRNAi00027495Inferred_automaticallyRNAi_primary
WBRNAi00111971Inferred_automaticallyRNAi_primary
WBRNAi00019600Inferred_automaticallyRNAi_primary
WBRNAi00054782Inferred_automaticallyRNAi_primary
Expr_patternExpr3368
Expr3383
Expr1022657
Expr1035429
Expr1158323
Expr2013262
Expr2031493
Drives_constructWBCnstr00011365
WBCnstr00030045
Construct_productWBCnstr00030045
Microarray_results (19)
Expression_cluster (317)
Interaction (125)
Map_infoMapXPosition2.85797
PositivePositive_cloneW04G3Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00026629
WBPaper00031097
WBPaper00032973
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene