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WormBase Tree Display for Gene: WBGene00012211

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Name Class

WBGene00012211SMapS_parentSequenceW02D9
IdentityVersion2
NameCGC_namessp-37Person_evidenceWBPerson261
Sequence_nameW02D9.5
Molecular_nameW02D9.5
W02D9.5.1
CE14462
Other_nameCELE_W02D9.5Accession_evidenceNDBBX284601
Public_namessp-37
DB_infoDatabaseAceViewgene1N154
WormQTLgeneWBGene00012211
WormFluxgeneWBGene00012211
NDBlocus_tagCELE_W02D9.5
PanthergeneCAEEL|WormBase=WBGene00012211|UniProtKB=Q9XVH1
familyPTHR22947
NCBIgene173127
RefSeqproteinNM_060784.5
TrEMBLUniProtAccQ9XVH1
UniProt_GCRPUniProtAccQ9XVH1
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:53WBPerson1971EventImportedInitial conversion from CDS class of WS125
210 Nov 2010 15:19:39WBPerson2970Name_changeCGC_namessp-37
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classssp
Allele (14)
RNASeq_FPKM (74)
GO_annotation00102440
Ortholog (55)
Paralog (33)
Structured_descriptionAutomated_descriptionInvolved in defense response to Gram-negative bacterium.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSW02D9.5
Corresponding_transcriptW02D9.5.1
Associated_featureWBsf985620
WBsf985621
WBsf1010920
WBsf220436
Experimental_infoRNAi_resultWBRNAi00004383Inferred_automaticallyRNAi_primary
WBRNAi00036198Inferred_automaticallyRNAi_primary
WBRNAi00054611Inferred_automaticallyRNAi_primary
Expr_patternExpr1026918
Expr1158155
Drives_constructWBCnstr00030066
Construct_productWBCnstr00030066
Microarray_results (14)
Expression_clusterWBPaper00033065:isp-1-1(qm150)_downregulated
WBPaper00035211:age-1_vs_age-1_downregulated
WBPaper00037682:sma-2_downregulated
WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00038118:aak-2(gt33)_downregulated
WBPaper00038237:age-1_upregulated_intestine_rescue
WBPaper00038237:age-1_upregulated_neuron_rescue
WBPaper00038237:age-1_upregulated_nontransgenic
WBPaper00038438:E.faecalis_24hr_downregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_downregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray
WBPaper00044260:1-methylnicotinamide_downregulated
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044578:reduced-humidity_downregulated_microarray
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:oscillating_dev_expression
WBPaper00045314:S.aureus-induced_hlh-30(tm1978)
WBPaper00045316:prg-1_downregulated_L4
WBPaper00045417:128Q-huntingtin_downreglated
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045571:germline-ablation_upregulated
WBPaper00049920:hyl-2(tm2031)_upregulated
WBPaper00049942:HeatShock_downregulated_hsf-1(RNAi)
WBPaper00049942:hsf-1(RNAi)_downregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053664:ins-11(tm1053)_downregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00054493:hpl-2(tm1489)_downregulated
WBPaper00055013:hmg-3(bar24)_upregulated
WBPaper00055354:eat-2(ad1116)_downregulated
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Psora_downregulated
WBPaper00055354:Rapamycin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
WBPaper00055354:Rapamycin-Rifampicin_downregulated
WBPaper00055354:Rifampicin-Allantoin_downregulated
WBPaper00055354:Rifampicin-Psora_downregulated
WBPaper00055354:Rifampicin_downregulated
WBPaper00055648:spermatheca_expressed
WBPaper00055941:atfs-1(et15)_downregulated
WBPaper00055971:nhl-2(ok818)_25C_upregulated
WBPaper00056443:DietaryRestriction_downregulated
WBPaper00056443:sek-1(km4)_downregulated
WBPaper00059231:alh-6(lax105)_L4_downregulated
WBPaper00059567:olrn-1(ums9)_regulated
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059739:hira-1(gk835598)_downregulated_adult
WBPaper00059987:Wounding_upregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060399:pqm-1(ok485)_upregulated_CoCl2_6hr
WBPaper00060445:ikb-1(nr2027)_upregulated_L4
WBPaper00060445:nfki-1(cer1)_ikb-1(nr2027)_upregulated_L4
WBPaper00060445:nfki-1(cer1)_upregulated_L4
WBPaper00061007:HB101_downregulated
WBPaper00061007:S.aquatilis_downregulated
WBPaper00061341:28C_24h_upregulated
WBPaper00061341:28C_48h_upregulated
WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection
WBPaper00061479:hrde-1(tm1200)_upregulated
WBPaper00061527:ZC373.2-Y62H9A.6_1596
WBPaper00061651:Spermatheca_enriched
WBPaper00061902:camt-1(ok515)_regulated_RMG
WBPaper00062354:H.zoospora_6h_regulated
WBPaper00062446:nhr-8(hd117)_downregulated
WBPaper00062672:let-418(n3536)dcp-66(RNAi)_downregulated
WBPaper00064071:NHR-49_interacting
WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064532:pals-25(icb98)_upregulated
WBPaper00064716:paraquat_upregulated
WBPaper00064952:Day1_vs_L4_upregulated_25C
WBPaper00064952:Day5_vs_L4_upregulated_20C
WBPaper00064952:Day5_vs_L4_upregulated_25C
WBPaper00064952:Day10_vs_Day1_upregulated_20C
WBPaper00064952:Day10_vs_Day1_upregulated_25C
WBPaper00064952:Day10_vs_Day5_upregulated_20C
WBPaper00064952:Day10_vs_L4_upregulated_20C
WBPaper00064952:Day10_vs_L4_upregulated_25C
WBPaper00065086:JU1400_N.ferruginous_regulated
WBPaper00065096:25C_vs_20C_upregulated
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065096:npr-8(ok1439)_upregulated_Day1_20C
WBPaper00065581:hpk-1(pk1393)_downregulated
WBPaper00065749:Heat-Shock_upregulated_endu-2(tm4977)
WBPaper00065841:43_0
WBPaper00065984:pals-17(syb3980)_upregulated
WBPaper00066004:ceh-14(ch3)_downregulated
WBPaper00066005:RAGA-1_degradation_somatic_upregulated
WBPaper00066110:Doxorubicin_downregulated_tetraploid
cgc4386_cluster_3_1
cgc4489_group_9
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00031252:AIN-2_IP_enriched
WBPaper00032062:age_regulated_genes
WBPaper00032165:differentially_expressed_with_age_medoid_6
WBPaper00033101:spr-5_regulated
WBPaper00036375:depleted_in_PVD_OLL
WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
WBPaper00040823:alg-1(gk214)_upregulated
WBPaper00040963:TA100_up
WBPaper00040963:TA200_up
WBPaper00040963:TA300_up
WBPaper00041002:HF_3d_0.2mM_Up
WBPaper00041002:HQ_3d_0.2mM_Up
WBPaper00041002:HQ_3d_2.0mM_Up
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041906:I-3690_vs_OP50_3d
WBPaper00042258:DA1877_upregulated_GravidAdult
WBPaper00044091:Bpseudomallei_induced_12h
WBPaper00044535:male_upregulated
WBPaper00045263:0.1mM-paraquat_downregulated
WBPaper00045263:isp-1(qm150)_downregulated
WBPaper00045263:nuo-6(qm200)_downregulated
WBPaper00045263:ProLongevity-mtROS_downregulated
WBPaper00045673:colistin_downregulated
WBPaper00048989:eat-2(ad465)_upregulated_in-DMSO
WBPaper00048989:N2_rapamycin_upregulated
WBPaper00051387:Triclosan_downregulated
WBPaper00056330:mrps-5(RNAi)_downregulated
[cgc6390]:Cluster_D
[cgc6390]:spermatogenesis-enriched
Interaction (214)
Map_infoMapIPosition13.5338Error0.030815
PositivePositive_cloneW02D9Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00050183
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene