WormBase Tree Display for Gene: WBGene00012118
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| WBGene00012118 | SMap | S_parent | Sequence | T28C6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | grsp-2 | Person_evidence | WBPerson168 | |||||
| Sequence_name | T28C6.1 | ||||||||
| Molecular_name (27) | |||||||||
| Other_name | CELE_T28C6.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | grsp-2 | ||||||||
| DB_info | Database | AceView | gene | 4J583 | |||||
| WormQTL | gene | WBGene00012118 | |||||||
| WormFlux | gene | WBGene00012118 | |||||||
| NDB | locus_tag | CELE_T28C6.1 | |||||||
| NCBI | gene | 177693 | |||||||
| RefSeq | protein | NM_001268403.3 | |||||||
| NM_001268408.3 | |||||||||
| NM_001307124.3 | |||||||||
| NM_001372891.3 | |||||||||
| NM_001268406.4 | |||||||||
| NM_001268404.3 | |||||||||
| NM_001268405.4 | |||||||||
| NM_001268407.3 | |||||||||
| NM_001372890.2 | |||||||||
| TrEMBL | UniProtAcc | A0A486WTM4 | |||||||
| X5LX98 | |||||||||
| C6KRI7 | |||||||||
| H2FLG9 | |||||||||
| H2L275 | |||||||||
| Q22843 | |||||||||
| H2L276 | |||||||||
| A0A486WX17 | |||||||||
| C6KRI8 | |||||||||
| UniProt_GCRP | UniProtAcc | H2FLG9 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 28 Jul 2005 14:15:27 | WBPerson2970 | Name_change | CGC_name | grsp-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | grsp | ||||||||
| Allele (45) | |||||||||
| Strain | WBStrain00031935 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | WBGene00042260 | Caenorhabditis briggsae | From_analysis | OMA | |||||
| WBGene00061421 | Caenorhabditis remanei | From_analysis | OMA | ||||||
| WBGene00089956 | Pristionchus pacificus | From_analysis | OMA | ||||||
| WBGene00162015 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
| chrIV_pilon.g11170 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | grsp-2 encodes a glycine-rich protein, predicted to be secreted; grsp-2 transcript levels are up-regulated in response to infection with the fungus Drechmeria coniospora. | Paper_evidence | WBPaper00032031 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 02 Apr 2013 00:00:00 | ||||||||
| Automated_description | Enriched in several structures, including ABalaappppa; ABalapaappa; PVT; rect_D; and rectal epithelial cell based on single-cell RNA-seq and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; proteomic; and RNA-seq studies. Is affected by eleven chemicals including Psoralens; allantoin; and Sirolimus based on RNA-seq; proteomic; and microarray studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T28C6.1a | |||||||
| T28C6.1b | |||||||||
| T28C6.1c | |||||||||
| T28C6.1d | |||||||||
| T28C6.1e | |||||||||
| T28C6.1f | |||||||||
| T28C6.1g | |||||||||
| T28C6.1h | |||||||||
| T28C6.1i | |||||||||
| Corresponding_CDS_history | T28C6.1:wp109 | ||||||||
| Corresponding_transcript | T28C6.1a.1 | ||||||||
| T28C6.1b.1 | |||||||||
| T28C6.1c.1 | |||||||||
| T28C6.1d.1 | |||||||||
| T28C6.1e.1 | |||||||||
| T28C6.1f.1 | |||||||||
| T28C6.1g.1 | |||||||||
| T28C6.1h.1 | |||||||||
| T28C6.1i.1 | |||||||||
| Other_sequence (11) | |||||||||
| Associated_feature (11) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00070848 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00054394 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00036075 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00019387 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00019388 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00070849 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1015011 | ||||||||
| Expr1035355 | |||||||||
| Expr1157941 | |||||||||
| Expr2012279 | |||||||||
| Expr2030515 | |||||||||
| Drives_construct | WBCnstr00030126 | ||||||||
| Construct_product | WBCnstr00030126 | ||||||||
| Microarray_results (34) | |||||||||
| Expression_cluster (184) | |||||||||
| Interaction | WBInteraction000543651 | ||||||||
| WBInteraction000543786 | |||||||||
| WBInteraction000563912 | |||||||||
| WBInteraction000585296 | |||||||||
| Map_info | Map | IV | Position | 3.97125 | Error | 0.002579 | |||
| Positive | Positive_clone | T28C6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5357 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00032031 | ||||||||
| WBPaper00062388 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
