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WormBase Tree Display for Gene: WBGene00012107

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Name Class

WBGene00012107SMapS_parentSequenceT27F6
IdentityVersion1
NameSequence_nameT27F6.8
Molecular_nameT27F6.8
T27F6.8.1
CE16517
Other_nameCELE_T27F6.8Accession_evidenceNDBBX284601
Public_nameT27F6.8
DB_infoDatabaseAceViewgene1N88
WormQTLgeneWBGene00012107
WormFluxgeneWBGene00012107
NDBlocus_tagCELE_T27F6.8
NCBIgene189005
RefSeqproteinNM_060770.4
TREEFAMTREEFAM_IDTF317348
TrEMBLUniProtAccO45872
UniProt_GCRPUniProtAccO45872
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:53WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (37)
RNASeq_FPKM (74)
Ortholog (30)
ParalogWBGene00009222Caenorhabditis elegansFrom_analysisTreeFam
WBGene00011263Caenorhabditis elegansFrom_analysisTreeFam
Structured_descriptionConcise_descriptionThis gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.Paper_evidenceWBPaper00012854
Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionEnriched in germline precursor cell; hypodermis; and intestine based on tiling array; RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by twenty chemicals including rotenone; Tunicamycin; and D-glucose based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: F-box domain.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDST27F6.8
Corresponding_transcriptT27F6.8.1
Associated_featureWBsf649664
WBsf665025
WBsf985577
WBsf985578
WBsf1010901
WBsf220432
Experimental_infoRNAi_resultWBRNAi00036051Inferred_automaticallyRNAi_primary
WBRNAi00004332Inferred_automaticallyRNAi_primary
WBRNAi00054345Inferred_automaticallyRNAi_primary
Expr_patternExpr1022102
Expr1035348
Expr1157891
Expr2006584
Expr2024800
Microarray_results (18)
Expression_clusterWBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00037849:sam-10(js94)_upregulated
WBPaper00037950:germline-precursors_embryo_enriched
WBPaper00037950:germline-precursors_embryo_SelectivelyEnriched
WBPaper00037950:hypodermis_embryo_enriched
WBPaper00037950:hypodermis_embryo_SelectivelyEnriched
WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
WBPaper00038438:S.marcescens_24hr_downregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
WBPaper00040990:PA14_upregulated
WBPaper00042215:wdr-23(tm1817)_upregulated
WBPaper00042561:smgl-1(RNAi)_upregulated
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044736:flat_dev_expression
WBPaper00044743:wdr-23_neuron_upregulated
WBPaper00045017:blmp-1(tm548)_upregulated
WBPaper00045417:128Q-huntingtin_downreglated
WBPaper00045420:fertilization_upregulated_transcript
WBPaper00045774:clk-1_upregulated
WBPaper00045971:tunicamycin_upregulated_control
WBPaper00046337:polysomal_daf-2_vs_daf-2;daf-16_downregulated
WBPaper00046337:polysomal_N2_vs_daf-2_downregulated
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
WBPaper00046805:csr-1(RNAi)_upregulated_Set1
WBPaper00046805:P-granule-RNAi_upregulated_Set1
WBPaper00047131:daf-2(e1370)_upregulated_N2-background
WBPaper00048971:daf-16(mgDf50)_upregulated_L1
WBPaper00048988:daf-2(e1370)_daf-16(mu86)_downregulated_neuron
WBPaper00048988:neuron_expressed
WBPaper00049368:daf-2(e1370)_upregulated
WBPaper00049732:blmp-1(tm548)_vs_N2_upregulated
WBPaper00049736:daf-2(e1370)_upregulated_15deg-then-25deg(12hr)
WBPaper00049920:Glucose-Diet_upregulated_hyl-2(tm2031)
WBPaper00049920:Glucose-Diet_upregulated_N2
WBPaper00049942:HeatShock_upregulated_hsf-1(+)
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00049954:BPA_downregulated
WBPaper00050163:chd-3(eh4)_downregulated_100-cell-embryo
WBPaper00050332:juglone_upregulated
WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_adult_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_adult_25C
WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_adult_25C
WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050561:indole_10-fold_upregulated
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050801:DAF-12_dauer_regulome
WBPaper00050801:DAF-16_dauer_regulome
WBPaper00050801:DPY-21_dauer_regulome
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050903:mir-35-41(nDf50)_25C_upregulated
WBPaper00050990:hypodermis_enriched
WBPaper00050990:hypodermis_expressed
WBPaper00051404:alg-1(gk214)_upregulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053020:sta-1(ok587)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053318:mir-71(n4115)_upregulated_mRNA
WBPaper00053388:dauer_regulated_Cluster4
WBPaper00053599:oocyte_vs_mitosis_upregulated
WBPaper00053810:daf-2(e1370)_upregulated
WBPaper00054872:egl-9(sa307)_upregulated
WBPaper00055049:S.gordonii_upregulated
WBPaper00055060:flr-1(RNAi)_upregulated
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Psora_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055354:Rifampicin_downregulated
WBPaper00055386:eat-2(ad465)_downregulated
WBPaper00055482:pmt-2(RNAi)_upregulated
WBPaper00055626:pry-1(mu38)_downregulated
WBPaper00055897:heat-shock_upregulated
WBPaper00055941:atfs-1(et15)_upregulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_upregulated_N2
WBPaper00056167:ifo-1(kc2)_downregulated
WBPaper00056169:rrf-3(pk1426)_upregulated_L1
WBPaper00056290:hsp-6(mg585)_upregulated
WBPaper00056290:mdt-15(mg584)_upregulated
WBPaper00056326:zip-3(gk3164)_upregulated_P.aeruginosa-infected
WBPaper00056330:glycine_downregulated
WBPaper00056443:DietaryRestriction_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056471:S.aureus-4h_upregulated_N2
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00057068:Cadmium_upregulated
WBPaper00057068:ints-4(RNAi)_downregulated_Cadmium
WBPaper00057154:HeatShock_upregulated_mRNA
WBPaper00057162:meg-3_meg-4_upregulated_sRNA
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058598:spn-4(tm291)_upregulated
WBPaper00058711:skn-1(lax188)_upregulated
WBPaper00058725:sftb-1(cer39)_downregulated
WBPaper00058948:PA14_downregulated
WBPaper00059117:B.subtilis_upregulated
WBPaper00059224:serotonin_downregulated
WBPaper00059566:wdr-23(mac32)_upregulated
WBPaper00059739:hira-1(gk835598)_upregulated_L1
WBPaper00059895:wounding_upregulated
WBPaper00059987:Wounding_upregulated
WBPaper00060014:set-2(tm1630)_downregulated
WBPaper00060084:cco-1(RNAi)_upregulated_N2
WBPaper00060273:isp-1(qm150)_upregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060445:nfki-1(cer1)_downregulated_L4
WBPaper00060683:hlh-11(ko1)_upregulated
WBPaper00060703:nas-38(ok3407)_upregulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060871:M.humicola-infection_48h_regulated
WBPaper00061081:E.faecalis_upregulated_N2
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061341:28C_24h_upregulated
WBPaper00061341:28C_48h_upregulated
WBPaper00061409:neuronal-fzo-1(RNAi)_upregulated
WBPaper00061422:let-607(RNAi)_regulated
WBPaper00061424:Diet_MYb120_upregulated
WBPaper00061439:unc-30(ok613)_upregulated
WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
WBPaper00061479:ubc-9(ne4833)_upregulated
WBPaper00061527:T16H12.9-kin-9_20752
WBPaper00061699:daf-18(ok480)_upregulated
WBPaper00061753:csr-1(tor159)_downregulated_20C
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062193:skn-1(RNAi)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062347:blmp-1(tm548)_upregulated
WBPaper00062354:H.zoospora_6h_regulated
WBPaper00062354:H.zoospora_12h_regulated
WBPaper00062715:blmp-1(s71)_upregulated
WBPaper00064005:starvation_downregulated_N2_mRNA
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064107:lin-35(n745)_upregulated
WBPaper00064156:lipl-4(overexpress)_upregulated
WBPaper00064158:xpo-1(RNAi)_upregulated
WBPaper00064539:nhr-114(gk849)_upregulated
WBPaper00064637:cox-5B(RNAi)_upregulated
WBPaper00064871:hypoxia_downregulated_F2
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065581:hpk-1(pk1393)_upregulated
WBPaper00065746:eat-2(ad1113)_downregulated
WBPaper00065835:Day5_vs_Day1_upregulated
WBPaper00065835:Day11_vs_Day1_upregulated
WBPaper00065841:2_0
WBPaper00065841:33_0
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066062:xrep-4(lax137)_upregulated
WBPaper00066085:sin-3(tm1276)_upregulated
WBPaper00066110:tetraploid_vs_diploid_upregulated
cgc4386_cluster_3_4
cgc4489_group_12
WBPaper00006465:III_ethanol_transient_induction
WBPaper00025141:N2_Expressed_Genes
WBPaper00026980:intestine_enriched
WBPaper00032165:differentially_expressed_with_age_medoid_2
WBPaper00032948:FedUp
WBPaper00035227:heat_shock_regulated
WBPaper00035424:ASER_up
WBPaper00035873:dpy-9_regulated
WBPaper00035873:osm-11_regulated
WBPaper00035905:FBF-1_Associated
WBPaper00036130:mir-243_up_regulated
WBPaper00036286:Pattern_H
WBPaper00038172:tax-6null_up_regulated
WBPaper00041960:N2_fasting_upregulated_9hto12h
WBPaper00041960:N2_fasting_upregulated_anytime
WBPaper00042067:Cu2+_upregulated_WT
WBPaper00042274:tbx-2(bx59)_upregulated
WBPaper00044091:Bpseudomallei_induced_8h
WBPaper00044091:Bpseudomallei_induced_12h
WBPaper00045015:nhr-25(RNAi)_upregulated
WBPaper00045263:0.1mM-paraquat_upregulated
WBPaper00045263:isp-1(qm150)_upregulated
WBPaper00045960:L4-lethargus_upregulated
WBPaper00046083:pmk-1(km25)_OP50_downregulated
WBPaper00048989:N2_allantoin_downregulated
WBPaper00048989:N2_rapamycin_upregulated
WBPaper00049311:AgNO3_regulated
WBPaper00051387:Triclosan_upregulated
WBPaper00051448:P.aeruginosa_Liquid-Killing_upregulated
WBPaper00053236:Starvation_regulated_N2
WBPaper00053827:pyoverdine_upregulated
WBPaper00056330:mrps-5(RNAi)_upregulated
[cgc5767]:expression_class_M
[cgc5767]:expression_class_SM
Interaction (39)
Map_infoPositivePositive_cloneT27F6Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionI13.2408
ReferenceWBPaper00012854
MethodGene