WormBase Tree Display for Gene: WBGene00012100
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| WBGene00012100 | SMap | S_parent | Sequence | CHROMOSOME_V | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | sipa-1 | Person_evidence | WBPerson260 | |||||
| Sequence_name | T27F2.2 | ||||||||
| Molecular_name (39) | |||||||||
| Other_name | CELE_T27F2.2 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | sipa-1 | ||||||||
| DB_info | Database | AceView | gene | 5M112 | |||||
| WormQTL | gene | WBGene00012100 | |||||||
| WormFlux | gene | WBGene00012100 | |||||||
| NDB | locus_tag | CELE_T27F2.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00012100|UniProtKB=H2L2C2 | |||||||
| family | PTHR15711 | ||||||||
| NCBI | gene | 179596 | |||||||
| RefSeq | protein (13) | ||||||||
| TrEMBL | UniProtAcc (13) | ||||||||
| UniProt_GCRP | UniProtAcc | H2L2C2 | |||||||
| OMIM | gene | 616655 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 07 Feb 2012 16:30:56 | WBPerson2970 | Name_change | CGC_name | sipa-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sipa | ||||||||
| Allele (74) | |||||||||
| Strain | WBStrain00031685 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00003489 | ||||||||
| 00003490 | |||||||||
| 00003491 | |||||||||
| 00010541 | |||||||||
| 00119288 | |||||||||
| 00119289 | |||||||||
| Ortholog (52) | |||||||||
| Paralog | WBGene00018734 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | T27F2.2 encodes a homolog of human SIPA1/EHBP1L1 (OMIM:602180) and itsparalogs. | Curator_confirmed | WBPerson567 | |||||
| Date_last_updated | 11 Dec 2006 00:00:00 | ||||||||
| Automated_description | Predicted to enable GTPase activator activity. Predicted to be involved in regulation of small GTPase mediated signal transduction. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in cataract 45. Is an ortholog of several human genes including SIPA1 (signal-induced proliferation-associated 1); SIPA1L1 (signal induced proliferation associated 1 like 1); and SIPA1L3 (signal induced proliferation associated 1 like 3). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0110262 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:23801) | ||||
| Molecular_info | Corresponding_CDS (13) | ||||||||
| Corresponding_CDS_history | T27F2.2:wp193 | ||||||||
| Corresponding_transcript (13) | |||||||||
| Other_sequence (56) | |||||||||
| Associated_feature | WBsf669395 | ||||||||
| WBsf669396 | |||||||||
| WBsf1001398 | |||||||||
| WBsf1001399 | |||||||||
| WBsf1001400 | |||||||||
| WBsf1020479 | |||||||||
| WBsf234560 | |||||||||
| WBsf234561 | |||||||||
| WBsf234562 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00054336 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00019350 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1021178 | ||||||||
| Expr1035343 | |||||||||
| Expr1157881 | |||||||||
| Expr2015822 | |||||||||
| Expr2034055 | |||||||||
| Drives_construct | WBCnstr00030135 | ||||||||
| Construct_product | WBCnstr00030135 | ||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (164) | |||||||||
| Interaction (28) | |||||||||
| Map_info | Map | V | Position | 3.22821 | |||||
| Positive | Positive_clone | T27F2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064323 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
