WormBase Tree Display for Gene: WBGene00012017
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| WBGene00012017 | SMap | S_parent | Sequence | T25C8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | shpk-1 | Person_evidence | WBPerson81 | |||||
| Sequence_name | T25C8.1 | ||||||||
| Molecular_name | T25C8.1 | ||||||||
| T25C8.1.1 | |||||||||
| CE54129 | |||||||||
| Other_name | exc-10 | ||||||||
| CELE_T25C8.1 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | shpk-1 | ||||||||
| DB_info | Database | AceView | gene | 3O699 | |||||
| WormQTL | gene | WBGene00012017 | |||||||
| WormFlux | gene | WBGene00012017 | |||||||
| NDB | locus_tag | CELE_T25C8.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00012017|UniProtKB=O45814 | |||||||
| family | PTHR10196 | ||||||||
| NCBI | gene | 188886 | |||||||
| RefSeq | protein | NM_001379986.2 | |||||||
| TREEFAM | TREEFAM_ID | TF315140 | |||||||
| TrEMBL | UniProtAcc | O45814 | |||||||
| UniProt_GCRP | UniProtAcc | O45814 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 20 May 2019 14:10:26 | WBPerson1983 | Name_change | CGC_name | shpk-1 | ||||
| Other_name | exc-10 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | shpk | ||||||||
| Allele (65) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00035306 | ||||||||
| 00035307 | |||||||||
| 00035308 | |||||||||
| 00035309 | |||||||||
| 00035310 | |||||||||
| 00035311 | |||||||||
| 00035312 | |||||||||
| 00119213 | |||||||||
| 00119214 | |||||||||
| Ortholog (20) | |||||||||
| Paralog | WBGene00011147 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00020007 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00016939 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Automated_description | Predicted to enable sedoheptulokinase activity. Predicted to be involved in glycerol metabolic process and phosphorylation. Predicted to be located in cytosol. Is an ortholog of human SHPK (sedoheptulokinase). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T25C8.1 | |||||||
| Corresponding_CDS_history | T25C8.1:wp141 | ||||||||
| T25C8.1:wp275 | |||||||||
| Corresponding_transcript | T25C8.1.1 | ||||||||
| Associated_feature | WBsf645721 | ||||||||
| WBsf659746 | |||||||||
| WBsf994946 | |||||||||
| WBsf994947 | |||||||||
| WBsf1016420 | |||||||||
| WBsf226036 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00019202 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00006457 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00054118 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1022106 | ||||||||
| Expr1157663 | |||||||||
| Expr2006494 | |||||||||
| Expr2024713 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (56) | |||||||||
| Interaction (26) | |||||||||
| Map_info | Map | III | Position | 21.2932 | |||||
| Positive | Positive_clone | T25C8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
