WormBase Tree Display for Gene: WBGene00012017
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WBGene00012017 | SMap | S_parent | Sequence | T25C8 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | shpk-1 | Person_evidence | WBPerson81 | |||
Sequence_name | T25C8.1 | ||||||
Molecular_name | T25C8.1 | ||||||
T25C8.1.1 | |||||||
CE54129 | |||||||
Other_name | exc-10 | ||||||
CELE_T25C8.1 | Accession_evidence | NDB | BX284603 | ||||
Public_name | shpk-1 | ||||||
DB_info | Database | AceView | gene | 3O699 | |||
WormQTL | gene | WBGene00012017 | |||||
WormFlux | gene | WBGene00012017 | |||||
NDB | locus_tag | CELE_T25C8.1 | |||||
Panther | gene | CAEEL|WormBase=WBGene00012017|UniProtKB=O45814 | |||||
family | PTHR10196 | ||||||
NCBI | gene | 188886 | |||||
RefSeq | protein | NM_001379986.2 | |||||
TREEFAM | TREEFAM_ID | TF315140 | |||||
TrEMBL | UniProtAcc | O45814 | |||||
UniProt_GCRP | UniProtAcc | O45814 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | shpk | ||||||
Allele (65) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00035306 | ||||||
00035307 | |||||||
00035308 | |||||||
00035309 | |||||||
00035310 | |||||||
00035311 | |||||||
00035312 | |||||||
00119213 | |||||||
00119214 | |||||||
Ortholog (20) | |||||||
Paralog | WBGene00011147 | Caenorhabditis elegans | From_analysis | Panther | |||
WBGene00020007 | Caenorhabditis elegans | From_analysis | Panther | ||||
WBGene00016939 | Caenorhabditis elegans | From_analysis | Panther | ||||
Structured_description | Automated_description | Predicted to enable sedoheptulokinase activity. Predicted to be involved in glycerol metabolic process and phosphorylation. Predicted to be located in cytosol. Is an ortholog of human SHPK (sedoheptulokinase). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | T25C8.1 | |||||
Corresponding_CDS_history | T25C8.1:wp141 | ||||||
T25C8.1:wp275 | |||||||
Corresponding_transcript | T25C8.1.1 | ||||||
Associated_feature | WBsf645721 | ||||||
WBsf659746 | |||||||
WBsf994946 | |||||||
WBsf994947 | |||||||
WBsf1016420 | |||||||
WBsf226036 | |||||||
Experimental_info | RNAi_result | WBRNAi00019202 | Inferred_automatically | RNAi_primary | |||
WBRNAi00006457 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00054118 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1022106 | ||||||
Expr1157663 | |||||||
Expr2006494 | |||||||
Expr2024713 | |||||||
Microarray_results (19) | |||||||
Expression_cluster (56) | |||||||
Interaction (26) | |||||||
Map_info | Map | III | Position | 21.2932 | |||
Positive | Positive_clone | T25C8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00038491 | ||||||
WBPaper00055090 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |