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WormBase Tree Display for Gene: WBGene00011849

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Name Class

WBGene00011849SMapS_parentSequenceT19H5
IdentityVersion1
NameSequence_nameT19H5.4
Molecular_nameT19H5.4
T19H5.4.1
CE43368
Other_nameCELE_T19H5.4Accession_evidenceNDBBX284602
Public_nameT19H5.4
DB_infoDatabase (8)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:53WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (14)
RNASeq_FPKM (74)
Ortholog (27)
Structured_descriptionAutomated_descriptionEnriched in ABplapppapp; ABprapppapp; head mesodermal cell; and neurons based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on tiling array; microarray; and RNA-seq studies. Is affected by nine chemicals including Psoralens; allantoin; and Sirolimus based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: Phosphorylation site.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDST19H5.4
Corresponding_CDS_historyT19H5.4a:wp274
Corresponding_transcriptT19H5.4.1
Other_sequence (25)
Associated_feature (12)
Experimental_infoRNAi_resultWBRNAi00035686Inferred_automaticallyRNAi_primary
WBRNAi00018877Inferred_automaticallyRNAi_primary
WBRNAi00053574Inferred_automaticallyRNAi_primary
Expr_patternExpr1011164
Expr1035220
Expr1157137
Expr2006274
Expr2024492
Drives_constructWBCnstr00030336
Construct_productWBCnstr00030336
Microarray_results (20)
Expression_clusterWBPaper00037055:DAF-16_binding_DNA
WBPaper00037682:sma-2_upregulated
WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00040412:germline-regulated_daf-16_target
WBPaper00044736:flat_dev_expression
WBPaper00045314:S.aureus-induced_N2
WBPaper00045417:128Q-huntingtin_downreglated
WBPaper00045521:Oogenic
WBPaper00045729:gld-2(RNAi)_downregulated
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_6h
WBPaper00048988:neuron_expressed
WBPaper00049018:ham-3(RNAi)_downregulated
WBPaper00049495:starvation-refeeding_regulated
WBPaper00050344:AFD-neuron_enriched
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050726:starvation_regulated_LowSalt
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:body-muscle_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00050990:pharynx_expressed
WBPaper00051404:alg-1(gk214)_upregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053321:lin-15B(RNAi)_downregulated_starved-L1_Truseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_L1_SMARTseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
WBPaper00053321:PGCs_depleted_NuGen
WBPaper00053388:dauer_regulated_Cluster2
WBPaper00053599:female_vs_male_upregulated
WBPaper00053599:mitosis_vs_meiosis_downregulated
WBPaper00053599:oocyte_vs_mitosis_downregulated
WBPaper00053810:daf-2(e1370)_upregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00055354:eat-2(ad1116)_downregulated
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Rapamycin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055354:Rapamycin-Psora_downregulated
WBPaper00055354:Rifampicin-Allantoin_downregulated
WBPaper00056139:soil-microbiota_upregulated
WBPaper00056218:daf-16(mu86)_upregulated_Day5
WBPaper00056218:daf-16(mu86)_upregulated_Day7
WBPaper00056275:P.aeruginosa_upregulated
WBPaper00056275:P.aeruginosa_upregulated_atf-7(qd22qd130)_dependent
WBPaper00056275:P.aeruginosa_upregulated_pmk-1(km25)_dependent
WBPaper00056471:S.aureus-4h_upregulated_N2
WBPaper00056809:smn-1(ok355)_upregulated
WBPaper00056826:hmc_biased
WBPaper00057068:Cadmium_upregulated
WBPaper00057288:Cold_downregulated_transcript
WBPaper00058691:cfp-1(tm6369)_downregulated
WBPaper00058948:PA14_downregulated
WBPaper00059117:B.subtilis_upregulated
WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
WBPaper00059356:BAZ-2_SET-6_interacting
WBPaper00059471:EGL-43_interacting
WBPaper00059763:neuron_expressed
WBPaper00060084:cco-1(RNAi)_upregulated_N2
WBPaper00060278:atp-2(RNAi)_upregulated
WBPaper00060459:bcat-1(RNAi)_upregulated
WBPaper00060661:sensory-neuron_enriched
WBPaper00060811:L1_vs_adult_upregulated_neural
WBPaper00061340:AVG
WBPaper00061340:Neuroblast_HSN_PHB
WBPaper00061527:chd-7_16664-jmjd-3.1
WBPaper00061651:ALA_enriched
WBPaper00061651:AVD_enriched
WBPaper00061651:AVG_enriched
WBPaper00061651:AVJ_enriched
WBPaper00061651:AVL_enriched
WBPaper00061651:PVC_enriched
WBPaper00061651:PVT_enriched
WBPaper00061651:PVW_enriched
WBPaper00061651:RID_enriched
WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
WBPaper00062159:hda-2(ok1479)_downregulated
WBPaper00062193:skn-1(RNAi)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062520:qui-1(db104)_upregulated
WBPaper00062590:Aging_downregulated_hypodermis
WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064315:mes-4(bn73)_upregulated_EGCs
WBPaper00064315:mrg-1(qa6200)_upregulated_PGCs
WBPaper00064716:paraquat_upregulated
WBPaper00064871:hypoxia_downregulated_F1
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065120:body-muscle-transcriptome
WBPaper00065373:Cisplatin_upregulated_WT
WBPaper00065623:69
WBPaper00065623:70
WBPaper00065835:Day11_vs_Day1_upregulated
WBPaper00065841:49_0
WBPaper00065841:60_0
WBPaper00065841:61_0
WBPaper00065841:73_0
WBPaper00065841:86_0
WBPaper00065841:103_0
WBPaper00065841:114_0
WBPaper00065841:131_0
WBPaper00066062:xrep-4(lax137)_upregulated
cgc4386_cluster_4_3
cgc4489_group_9
WBPaper00025032:cluster_67
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00031252:AIN-1_IP_enriched
WBPaper00032948:StarveUp2
WBPaper00034739:N2moreDR1350
WBPaper00035227:heat_shock_regulated
WBPaper00035905:FBF-1_Associated
WBPaper00036286:Pattern_D
WBPaper00037113:DZN_16C_up-regulated
WBPaper00038172:crh-1null_up_regulated
WBPaper00038172:tax-6null_up_regulated
WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2up
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00041606:CE_B.thuringiensis-DB27_regulated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00042234:xpa-1_upregulated
WBPaper00045263:0.1mM-paraquat_upregulated
WBPaper00045263:nuo-6(qm200)_upregulated
WBPaper00047070:N2_starvation_upregulated
WBPaper00047070:xpa-1_UV_upregulated
WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
WBPaper00057098:SiO2-nanoparticles_upregulated
[cgc5767]:cluster_4
[cgc5767]:expression_class_E
[cgc5767]:expression_class_ET
[cgc5767]:expression_class_ET_max(101_min)
[cgc5767]:expression_class_E_pi(53_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_ME
[cgc5767]:expression_class_MET
InteractionWBInteraction000233506
WBInteraction000291325
WBInteraction000297253
WBInteraction000369691
WBInteraction000452521
WBInteraction000583809
WBInteraction000584218
Map_infoPositivePositive_cloneT19H5Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionII1.44176
ReferenceWBPaper00060275
MethodGene