WormBase Tree Display for Gene: WBGene00011832
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| WBGene00011832 | SMap | S_parent | Sequence | T19B10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | bgal-1 | Person_evidence | WBPerson105 | |||||
| Sequence_name | T19B10.3 | ||||||||
| Molecular_name | T19B10.3 | ||||||||
| T19B10.3.1 | |||||||||
| CE37992 | |||||||||
| T19B10.3.2 | |||||||||
| Other_name | CELE_T19B10.3 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | bgal-1 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 25 Sep 2014 10:29:23 | WBPerson2970 | Name_change | CGC_name | bgal-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | bgal | ||||||||
| Allele (48) | |||||||||
| Strain | WBStrain00002715 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00079986 | ||||||||
| 00079987 | |||||||||
| 00079988 | |||||||||
| 00079989 | |||||||||
| 00079990 | |||||||||
| 00079991 | |||||||||
| 00119060 | |||||||||
| 00119061 | |||||||||
| 00119062 | |||||||||
| Ortholog (42) | |||||||||
| Paralog | WBGene00019225 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | The T19B10.3 gene encodes an ortholog of the human gene GALACTOSIDASE, BETA 1 (GLB1), which when mutated leads to gangliosidosis type I (OMIM:230500). | Paper_evidence | WBPaper00004637 | |||||
| Curator_confirmed | WBPerson1823 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable beta-galactosidase activity. Predicted to be involved in carbohydrate metabolic process. Predicted to be located in vacuole. Human ortholog(s) of this gene implicated in GM1 gangliosidosis (multiple) and mucopolysaccharidosis type IVB. Is an ortholog of human GLB1L (galactosidase beta 1 like). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0080489 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4298) | ||||
| DOID:0080502 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4298) | ||||||
| DOID:3322 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4298) | ||||||
| DOID:0111392 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4298) | ||||||
| DOID:0080501 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4298) | ||||||
| DOID:12804 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4298) | ||||||
| Molecular_info | Corresponding_CDS | T19B10.3 | |||||||
| Corresponding_CDS_history | T19B10.3:wp138 | ||||||||
| Corresponding_transcript | T19B10.3.1 | ||||||||
| T19B10.3.2 | |||||||||
| Other_sequence (32) | |||||||||
| Associated_feature | WBsf653088 | ||||||||
| WBsf234513 | |||||||||
| WBsf234514 | |||||||||
| WBsf234515 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00018817 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00053492 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1586 | ||||||||
| Expr6711 | |||||||||
| Expr6712 | |||||||||
| Expr14794 | |||||||||
| Expr1023622 | |||||||||
| Expr1035214 | |||||||||
| Expr1157058 | |||||||||
| Expr2009617 | |||||||||
| Expr2027855 | |||||||||
| Drives_construct | WBCnstr00003253 | ||||||||
| WBCnstr00004566 | |||||||||
| WBCnstr00030350 | |||||||||
| WBCnstr00040767 | |||||||||
| Construct_product | WBCnstr00030350 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (145) | |||||||||
| Interaction | WBInteraction000173110 | ||||||||
| WBInteraction000174204 | |||||||||
| WBInteraction000174456 | |||||||||
| WBInteraction000363053 | |||||||||
| Map_info | Map | V | Position | 2.9735 | |||||
| Positive | Positive_clone | T19B10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00042257 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00056826 | |||||||||
| WBPaper00065937 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
