WormBase Tree Display for Gene: WBGene00011625
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| WBGene00011625 | SMap | S_parent | Sequence | T08G5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | vps-39 | Paper_evidence | WBPaper00031805 | |||||
| Sequence_name | T08G5.5 | ||||||||
| Molecular_name (12) | |||||||||
| Other_name | CELE_T08G5.5 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | vps-39 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00011625 | |||||
| WormFlux | gene | WBGene00011625 | |||||||
| NDB | locus_tag | CELE_T08G5.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00011625|UniProtKB=Q1ZXS5 | |||||||
| family | PTHR12894 | ||||||||
| NCBI | gene | 179902 | |||||||
| RefSeq | protein | NM_001047698.5 | |||||||
| NM_001129538.6 | |||||||||
| NM_001047699.5 | |||||||||
| NM_001373154.2 | |||||||||
| SwissProt | UniProtAcc | Q1ZXS5 | |||||||
| TREEFAM | TREEFAM_ID | TF105803 | |||||||
| TrEMBL | UniProtAcc | A0A486WXM5 | |||||||
| UniProt_GCRP | UniProtAcc | Q1ZXS5 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 29 Apr 2008 17:21:43 | WBPerson2970 | Name_change | CGC_name | vps-39 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | vps | ||||||||
| Allele (64) | |||||||||
| Strain | WBStrain00037399 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (19) | |||||||||
| Ortholog (39) | |||||||||
| Structured_description | Automated_description | Predicted to be involved in autophagy and endosomal vesicle fusion. Predicted to be located in cytoplasm and membrane. Predicted to be part of HOPS complex. Is an ortholog of human VPS39 (VPS39 subunit of HOPS complex). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T08G5.5a | |||||||
| T08G5.5b | |||||||||
| T08G5.5c | |||||||||
| T08G5.5d | |||||||||
| Corresponding_transcript | T08G5.5a.1 | ||||||||
| T08G5.5b.1 | |||||||||
| T08G5.5c.1 | |||||||||
| T08G5.5d.1 | |||||||||
| Other_sequence | CRC05965_1 | ||||||||
| Hbac_isotig02616 | |||||||||
| JI166603.1 | |||||||||
| CBC00075_1 | |||||||||
| FK808543.1 | |||||||||
| Acan_isotig14212 | |||||||||
| FK801261.1 | |||||||||
| CR05511 | |||||||||
| Dviv_isotig23493 | |||||||||
| Oden_isotig23582 | |||||||||
| Associated_feature | WBsf653362 | ||||||||
| WBsf1001918 | |||||||||
| WBsf1001919 | |||||||||
| WBsf1020777 | |||||||||
| WBsf1020778 | |||||||||
| WBsf234899 | |||||||||
| WBsf234900 | |||||||||
| WBsf234901 | |||||||||
| WBsf234902 | |||||||||
| Experimental_info | RNAi_result (26) | ||||||||
| Expr_pattern | Expr1025015 | ||||||||
| Expr1035119 | |||||||||
| Expr1156501 | |||||||||
| Expr2018029 | |||||||||
| Expr2036166 | |||||||||
| Drives_construct | WBCnstr00030520 | ||||||||
| Construct_product | WBCnstr00030520 | ||||||||
| Microarray_results (27) | |||||||||
| Expression_cluster (98) | |||||||||
| Interaction (127) | |||||||||
| Map_info | Map | V | Position | 6.08411 | Error | 0.002866 | |||
| Positive | Positive_clone | T08G5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (13) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
