WormBase Tree Display for Gene: WBGene00011610

WBGene00011610 SMap: S_parent: Sequence: T08D2
  Identity: Version: 1
    Name: Sequence_name: T08D2.5
      Molecular_name: T08D2.5
        T08D2.5.1
        CE21171
        T08D2.5.2
      Other_name: CELE_T08D2.5 Accession_evidence: NDB BX284606
      Public_name: T08D2.5
    DB_info: Database: AceView gene XA807
            XA806
        WormQTL gene WBGene00011610
        WormFlux gene WBGene00011610
        NDB locus_tag CELE_T08D2.5
        NCBI gene 188283
        RefSeq protein NM_001392711.1
        TREEFAM TREEFAM_ID TF322499
        TrEMBL UniProtAcc A4F322
        UniProt_GCRP UniProtAcc A4F322
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:52 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (34)
    RNASeq_FPKM (74)
    Contained_in_operon: CEOPX004
    Ortholog (36)
    Paralog: WBGene00020467 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00021763 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Enriched in AFD; germline precursor cell; hypodermis; and intestine based on RNA-seq and microarray studies. Is affected by several genes including daf-16; sir-2.1; and pgl-1 based on microarray and RNA-seq studies. Is affected by nine chemicals including methylmercuric chloride; D-glucose; and tert-Butylhydroperoxide based on microarray and RNA-seq studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T08D2.5
    Corresponding_transcript: T08D2.5.1
      T08D2.5.2
    Other_sequence: CBC00501_1
      CRC11654_1
      CR05611
  Experimental_info: RNAi_result (14)
    Expr_pattern: Expr1024163
      Expr1156465
      Expr2006001
      Expr2024217
    Microarray_results (18)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00032097:CGH-1-associated-mRNA
      WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00042561:smg-2(RNAi)_upregulated
      WBPaper00044316:CH3HgCl_2.0uM_upregulated
      WBPaper00044316:CH3HgCl_7.5uM_upregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045050:csr-1(hypomorph)_downregulated
      WBPaper00045050:drh-3 (ne4253)_downregulated
      WBPaper00045521:Gender_Neutral
      WBPaper00045571:germline-ablation_downregulated
      WBPaper00046805:csr-1(RNAi)_downregulated_Set1
      WBPaper00048971:daf-16(mgDf50)_downregulated_L1
      WBPaper00048988:neuron_expressed
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
      WBPaper00049920:Glucose-Diet_downregulated_hyl-2(tm2031)
      WBPaper00050163:chd-3(eh4);let-418(RNAi)_downregulated_100-cell-embryo
      WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:downregulated_P-granule(-)GFP(-)_vs_control_day1-adult
      WBPaper00050859:downregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050990:hypodermis_enriched
      WBPaper00050990:hypodermis_expressed
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
      WBPaper00053318:Aging_upregulated_mRNA_N2
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_downregulated_fed-L1_Truseq
      WBPaper00053321:PGCs_enriched_NuGen
      WBPaper00053599:female_vs_male_upregulated
      WBPaper00053798:nhr-49(nr2041)_tBOOH_upregulated
      WBPaper00055354:Rapamycin-Allantoin_upregulated
      WBPaper00055354:Rapamycin_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00057288:iff-1(RNAi)_upregulated_transcript
      WBPaper00058598:mex-3(eu149)_downregulated
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00059426:Ag-nanoparticles_upregulated
      WBPaper00059605:mut-16(pk710)_downregulated
      WBPaper00059605:simr-1(cmp36)_downregulated
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061613:human-amyloid-beta_alpha-Synuclein(A53T)_upregulated
      WBPaper00061613:human-amyloid-beta_upregulated
      WBPaper00061995:mter-4(syb3662syb3403)_upregulated
      WBPaper00062146:MOG-7-degron_1h_regulated
      WBPaper00062146:MOG-7-degron_2h_regulated
      WBPaper00062497:xpf-1(tm2842)_downregulated
      WBPaper00062585:hlh-26(ok1453)_downregulated_E.faecium
      WBPaper00064156:lipl-4(overexpress)_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065158:AFD_enriched
      WBPaper00065984:pals-17(syb3980)_upregulated
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066085:sin-3(tm1276)_downregulated
      cgc4489_group_1
      cgc4489_group_2
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00036123:Atrazine_regulated
      WBPaper00040823:alg-1(gk214)_downregulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00051387:Triclosan_downregulated
      WBPaper00056330:mrps-5(RNAi)_downregulated
      [cgc6390]:Cluster_F
      [cgc6390]:intrinsic
    Interaction (17)
  Map_info: Positive: Positive_clone: T08D2 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: X -20.6129
  Method: Gene