WormBase Tree Display for Gene: WBGene00011590
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WBGene00011590 | SMap | S_parent | Sequence | T07F10 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | bus-19 | Paper_evidence | WBPaper00028877 | |||
Person_evidence | WBPerson261 | ||||||
Sequence_name | T07F10.4 | ||||||
Molecular_name | T07F10.4a | ||||||
T07F10.4a.1 | |||||||
CE36194 | |||||||
T07F10.4b | |||||||
Other_name | CELE_T07F10.4 | Accession_evidence | NDB | BX284605 | |||
Public_name | bus-19 | ||||||
DB_info | Database | WormQTL | gene | WBGene00011590 | |||
WormFlux | gene | WBGene00011590 | |||||
NDB | locus_tag | CELE_T07F10.4 | |||||
Panther | gene | CAEEL|WormBase=WBGene00011590|UniProtKB=Q22316 | |||||
family | PTHR43220 | ||||||
NCBI | gene | 179766 | |||||
RefSeq | protein | NM_001047697.5 | |||||
NR_003174.1 | |||||||
TREEFAM | TREEFAM_ID | TF314301 | |||||
TrEMBL | UniProtAcc | Q22316 | |||||
UniProt_GCRP | UniProtAcc | Q22316 | |||||
RNAcentral | URSid | URS0000511154 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | bus | ||||||
Allele (162) | |||||||
Strain | WBStrain00004692 | ||||||
WBStrain00004699 | |||||||
WBStrain00004700 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00074886 | ||||||
00074887 | |||||||
Ortholog (33) | |||||||
Paralog | WBGene00006520 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00013513 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
Structured_description | Concise_description | bus-19 encodes an ancient but unfamiliar transmembrane protein required for colonization by Microbacterium nematophilum and the tail-swelling response to M. nematophilum infection, as well as for cuticle integrity and traction during movement, normal alae and body shape, dauer formation, normally rapid growth, and larval viability; BUS-19 (along with Y71A12C.2) is orthologous to human TMEM41A, and paralogous to TAG-175/D2013.10 and human TMEM41B; both BUS-19 and TAG-175 are orthologous to plant and fungal proteins such as budding yeast Tvp38p, and bacterial proteins such as Geobacter metallireducens DedA; given its orthology with Tvp38p, BUS-19 may colocalize to late Golgi vesicles with the Tlg2p ortholog SYN-16 and with a variety of other protein ligands. | Paper_evidence | WBPaper00028877 | |||
WBPaper00030783 | |||||||
WBPaper00030784 | |||||||
WBPaper00030785 | |||||||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 17 Jul 2007 00:00:00 | ||||||
Automated_description | Predicted to be located in membrane. Is an ortholog of human TMEM41A (transmembrane protein 41A). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | T07F10.4a | |||||
Corresponding_CDS_history | T07F10.4:wp114 | ||||||
Corresponding_transcript | T07F10.4b | ||||||
T07F10.4a.1 | |||||||
Other_sequence (20) | |||||||
Associated_feature (18) | |||||||
Experimental_info | RNAi_result | WBRNAi00052771 | Inferred_automatically | RNAi_primary | |||
WBRNAi00035312 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00090769 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00090768 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1018972 | ||||||
Expr1035108 | |||||||
Expr1156378 | |||||||
Expr2009686 | |||||||
Expr2027925 | |||||||
Drives_construct | WBCnstr00030536 | ||||||
Construct_product | WBCnstr00030536 | ||||||
Microarray_results (25) | |||||||
Expression_cluster (211) | |||||||
Interaction (49) | |||||||
Map_info | Map | V | Position | 4.72059 | |||
Positive | Positive_clone | T07F10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00028877 | ||||||
WBPaper00038491 | |||||||
WBPaper00052104 | |||||||
WBPaper00055090 | |||||||
WBPaper00058949 | |||||||
WBPaper00062563 | |||||||
WBPaper00063192 | |||||||
WBPaper00065106 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
[140923 pad] Modified Map position as it was a reverse physical that could not be fixed by automated methods. | |||||||
Method | Gene |