WormBase Tree Display for Gene: WBGene00011590
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| WBGene00011590 | SMap | S_parent | Sequence | T07F10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | bus-19 | Paper_evidence | WBPaper00028877 | |||||
| Person_evidence | WBPerson261 | ||||||||
| Sequence_name | T07F10.4 | ||||||||
| Molecular_name | T07F10.4a | ||||||||
| T07F10.4a.1 | |||||||||
| CE36194 | |||||||||
| T07F10.4b | |||||||||
| Other_name | CELE_T07F10.4 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | bus-19 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00011590 | |||||
| WormFlux | gene | WBGene00011590 | |||||||
| NDB | locus_tag | CELE_T07F10.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00011590|UniProtKB=Q22316 | |||||||
| family | PTHR43220 | ||||||||
| NCBI | gene | 179766 | |||||||
| RefSeq | protein | NM_001047697.5 | |||||||
| NR_003174.1 | |||||||||
| TREEFAM | TREEFAM_ID | TF314301 | |||||||
| TrEMBL | UniProtAcc | Q22316 | |||||||
| UniProt_GCRP | UniProtAcc | Q22316 | |||||||
| RNAcentral | URSid | URS0000511154 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 01 Feb 2007 10:30:33 | WBPerson2970 | Name_change | CGC_name | bus-19 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | bus | ||||||||
| Allele (162) | |||||||||
| Strain | WBStrain00004692 | ||||||||
| WBStrain00004699 | |||||||||
| WBStrain00004700 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00074886 | ||||||||
| 00074887 | |||||||||
| Ortholog (33) | |||||||||
| Paralog | WBGene00006520 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00013513 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | bus-19 encodes an ancient but unfamiliar transmembrane protein required for colonization by Microbacterium nematophilum and the tail-swelling response to M. nematophilum infection, as well as for cuticle integrity and traction during movement, normal alae and body shape, dauer formation, normally rapid growth, and larval viability; BUS-19 (along with Y71A12C.2) is orthologous to human TMEM41A, and paralogous to TAG-175/D2013.10 and human TMEM41B; both BUS-19 and TAG-175 are orthologous to plant and fungal proteins such as budding yeast Tvp38p, and bacterial proteins such as Geobacter metallireducens DedA; given its orthology with Tvp38p, BUS-19 may colocalize to late Golgi vesicles with the Tlg2p ortholog SYN-16 and with a variety of other protein ligands. | Paper_evidence | WBPaper00028877 | |||||
| WBPaper00030783 | |||||||||
| WBPaper00030784 | |||||||||
| WBPaper00030785 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jul 2007 00:00:00 | ||||||||
| Automated_description | Predicted to be located in membrane. Is an ortholog of human TMEM41A (transmembrane protein 41A). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T07F10.4a | |||||||
| Corresponding_CDS_history | T07F10.4:wp114 | ||||||||
| Corresponding_transcript | T07F10.4b | ||||||||
| T07F10.4a.1 | |||||||||
| Other_sequence (20) | |||||||||
| Associated_feature (18) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00052771 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00035312 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00090769 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00090768 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1018972 | ||||||||
| Expr1035108 | |||||||||
| Expr1156378 | |||||||||
| Expr2009686 | |||||||||
| Expr2027925 | |||||||||
| Drives_construct | WBCnstr00030536 | ||||||||
| Construct_product | WBCnstr00030536 | ||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (211) | |||||||||
| Interaction (49) | |||||||||
| Map_info | Map | V | Position | 4.72059 | |||||
| Positive | Positive_clone | T07F10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (8) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| [140923 pad] Modified Map position as it was a reverse physical that could not be fixed by automated methods. | |||||||||
| Method | Gene |
