WormBase Tree Display for Gene: WBGene00011488
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WBGene00011488 | SMap | S_parent | Sequence | T05F1 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | nra-2 | Paper_evidence | WBPaper00026635 | |||||
Person_evidence | WBPerson2633 | ||||||||
Sequence_name | T05F1.1 | ||||||||
Molecular_name | T05F1.1a | ||||||||
T05F1.1a.1 | |||||||||
CE13267 | |||||||||
T05F1.1b | |||||||||
CE41012 | |||||||||
T05F1.1b.1 | |||||||||
Other_name | CELE_T05F1.1 | Accession_evidence | NDB | BX284601 | |||||
Public_name | nra-2 | ||||||||
DB_info | Database | AceView | gene | 1K197 | |||||
WormQTL | gene | WBGene00011488 | |||||||
WormFlux | gene | WBGene00011488 | |||||||
NDB | locus_tag | CELE_T05F1.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00011488|UniProtKB=A5JYX8 | |||||||
family | PTHR31826 | ||||||||
NCBI | gene | 172803 | |||||||
RefSeq | protein | NM_060152.5 | |||||||
NM_001129042.4 | |||||||||
SwissProt | UniProtAcc | A5JYX8 | |||||||
TREEFAM | TREEFAM_ID | TF105849 | |||||||
UniProt_GCRP | UniProtAcc | A5JYX8 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 03 Aug 2009 11:56:38 | WBPerson9133 | Name_change | CGC_name | nra-2 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | nra | ||||||||
Allele (37) | |||||||||
Strain | WBStrain00032177 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (11) | |||||||||
Ortholog (38) | |||||||||
Structured_description | Automated_description | Involved in protein-containing complex assembly and regulation of protein targeting to membrane. Located in endoplasmic reticulum. Expressed in body wall musculature; egg-laying apparatus; excretory canal; neurons; and pharyngeal muscle cell. Is an ortholog of human NCLN (nicalin). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | T05F1.1a | |||||||
T05F1.1b | |||||||||
Corresponding_transcript | T05F1.1a.1 | ||||||||
T05F1.1b.1 | |||||||||
Other_sequence (41) | |||||||||
Associated_feature | WBsf643599 | ||||||||
WBsf218303 | |||||||||
WBsf218304 | |||||||||
WBsf218305 | |||||||||
Experimental_info | RNAi_result | WBRNAi00089149 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00116979 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00052534 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00066725 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00066527 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00001661 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00004135 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr8663 | ||||||||
Expr8665 | |||||||||
Expr1017482 | |||||||||
Expr1035057 | |||||||||
Expr1156158 | |||||||||
Expr2014434 | |||||||||
Expr2032675 | |||||||||
Drives_construct | WBCnstr00013431 | ||||||||
WBCnstr00030616 | |||||||||
Construct_product | WBCnstr00013429 | ||||||||
WBCnstr00030616 | |||||||||
Microarray_results (21) | |||||||||
Expression_cluster (145) | |||||||||
Interaction (102) | |||||||||
Map_info | Map | I | Position | 3.81265 | Error | 0.001756 | |||
Positive | Positive_clone | T05F1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00034730 | ||||||||
WBPaper00035364 | |||||||||
WBPaper00037283 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00043664 | |||||||||
WBPaper00044907 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00064339 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |