WormBase Tree Display for Gene: WBGene00011488

WBGene00011488 SMap: S_parent: Sequence: T05F1
  Identity: Version: 2
    Name: CGC_name: nra-2 Paper_evidence: WBPaper00026635
          Person_evidence: WBPerson2633
      Sequence_name: T05F1.1
      Molecular_name: T05F1.1a
        T05F1.1a.1
        CE13267
        T05F1.1b
        CE41012
        T05F1.1b.1
      Other_name: CELE_T05F1.1 Accession_evidence: NDB BX284601
      Public_name: nra-2
    DB_info: Database: AceView gene 1K197
        WormQTL gene WBGene00011488
        WormFlux gene WBGene00011488
        NDB locus_tag CELE_T05F1.1
        Panther gene CAEEL|WormBase=WBGene00011488|UniProtKB=A5JYX8
          family PTHR31826
        NCBI gene 172803
        RefSeq protein NM_060152.5
            NM_001129042.4
        SwissProt UniProtAcc A5JYX8
        TREEFAM TREEFAM_ID TF105849
        UniProt_GCRP UniProtAcc A5JYX8
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:52 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 03 Aug 2009 11:56:38 WBPerson9133 Name_change: CGC_name: nra-2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nra
    Allele (37)
    Strain: WBStrain00032177
    RNASeq_FPKM (74)
    GO_annotation (11)
    Ortholog: WBGene00026511 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00079923 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00139988 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            WormBase-Compara
      WBGene00164929 Caenorhabditis brenneri From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00129611 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00225848 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g12303 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g7297 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g3648 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g7733 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g13472 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g579 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g8041 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g18634 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g203 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g617 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00869.g14653 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_06963.g20593 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_15275.g24986 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-nra-2 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g14686 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00194.g6751 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_11627 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_000552 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g05976 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g13941 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_10068100 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrI_pilon.g1860 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00237026 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00278535 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00261845 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00288193 Trichuris muris From_analysis: WormBase-Compara
      FB:FBgn0032217 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-030131-8788 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-050913-21 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:26923 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1926081 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1309355 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Automated_description: Involved in protein-containing complex assembly and regulation of protein targeting to membrane. Located in endoplasmic reticulum. Expressed in body wall musculature; egg-laying apparatus; excretory canal; neurons; and pharyngeal muscle cell. Is an ortholog of human NCLN (nicalin). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T05F1.1a
      T05F1.1b
    Corresponding_transcript: T05F1.1a.1
      T05F1.1b.1
    Other_sequence (41)
    Associated_feature: WBsf643599
      WBsf218303
      WBsf218304
      WBsf218305
  Experimental_info: RNAi_result: WBRNAi00089149 Inferred_automatically: RNAi_primary
      WBRNAi00116979 Inferred_automatically: RNAi_primary
      WBRNAi00052534 Inferred_automatically: RNAi_primary
      WBRNAi00066725 Inferred_automatically: RNAi_primary
      WBRNAi00066527 Inferred_automatically: RNAi_primary
      WBRNAi00001661 Inferred_automatically: RNAi_primary
      WBRNAi00004135 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr8663
      Expr8665
      Expr1017482
      Expr1035057
      Expr1156158
      Expr2014434
      Expr2032675
    Drives_construct: WBCnstr00013431
      WBCnstr00030616
    Construct_product: WBCnstr00013429
      WBCnstr00030616
    Microarray_results (21)
    Expression_cluster (145)
    Interaction (102)
  Map_info: Map: I Position: 3.81265 Error: 0.001756
    Positive: Positive_clone: T05F1 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00034730
    WBPaper00035364
    WBPaper00037283
    WBPaper00038491
    WBPaper00043664
    WBPaper00044907
    WBPaper00055090
    WBPaper00064339
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene