WormBase Tree Display for Gene: WBGene00011417

WBGene00011417 SMap: S_parent: Sequence: T04A11
  Identity: Version: 1
    Name: Sequence_name: T04A11.2
      Molecular_name: T04A11.2
        T04A11.2.1
        CE13124
      Other_name: CELE_T04A11.2 Accession_evidence: NDB BX284604
      Public_name: T04A11.2
    DB_info: Database: AceView gene 4N240
        WormQTL gene WBGene00011417
        WormFlux gene WBGene00011417
        NDB locus_tag CELE_T04A11.2
        Panther gene CAEEL|WormBase=WBGene00011417|UniProtKB=G5ECB5
          family PTHR13774
        NCBI gene 188043
        RefSeq protein NM_069985.3
        TREEFAM TREEFAM_ID TF314596
        TrEMBL UniProtAcc G5ECB5
        UniProt_GCRP UniProtAcc G5ECB5
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:52 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele: WBVar01499522
      WBVar01500079
      WBVar02124482
      WBVar01498806
      WBVar01498807
      WBVar01498811
      WBVar01498996
      WBVar01499925
      WBVar02124705
      WBVar01498660
      WBVar02121031
      WBVar02121220
      WBVar02122612
      WBVar01498771
      WBVar01500245
      WBVar01500065
      WBVar01498778
    RNASeq_FPKM (74)
    GO_annotation: 00011440
      00011441
      00011442
      00118687
      00118688
    Ortholog (34)
    Paralog: WBGene00011416 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00011419 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00011420 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00235310 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable isomerase activity. Predicted to be involved in biosynthetic process. Predicted to be located in cytoplasm. Is an ortholog of human PBLD (phenazine biosynthesis like protein domain containing). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T04A11.2
    Corresponding_transcript: T04A11.2.1
    Other_sequence: Oden_isotig15197
      Oden_isotig15198
    Associated_feature: WBsf998132
      WBsf231028
  Experimental_info: RNAi_result: WBRNAi00052318 Inferred_automatically: RNAi_primary
      WBRNAi00052316 Inferred_automatically: RNAi_primary
      WBRNAi00018096 Inferred_automatically: RNAi_primary
      WBRNAi00052317 Inferred_automatically: RNAi_primary
      WBRNAi00018099 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1022630
      Expr1035025
      Expr1155950
    Drives_construct: WBCnstr00030673
    Construct_product: WBCnstr00030673
    Microarray_results (21)
    Expression_cluster: WBPaper00032425:down_in_rde-4
      WBPaper00032425:down_in_zfp-1
      WBPaper00040285:H2S_24hr_upregulated
      WBPaper00046024:sleep_downregulated_oscillating
      WBPaper00048926:miaserin_upregulated_adult-day5
      WBPaper00048971:daf-16(mgDf50)_downregulated_L1
      WBPaper00049018:swsn-2.2(RNAi)_upregulated
      WBPaper00050344:PLM-neuron_enriched
      WBPaper00050468:hlh-30-dependent_Cry5B_regulated
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00051245:epidermis_cytoplasm_expressed
      WBPaper00051245:epidermis_specific
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00054872:egl-9(sa307)_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rapamycin_downregulated
      WBPaper00055482:pmt-2(RNAi)_upregulated
      WBPaper00055626:pry-1(mu38)_upregulated
      WBPaper00055827:daf-2(e1370)_upregulated
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056275:P.aeruginosa_upregulated
      WBPaper00056275:P.aeruginosa_upregulated_atf-7(qd22qd130)_dependent
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00057068:ints-4(RNAi)_downregulated_Cadmium
      WBPaper00057068:numr-1(RNAi)_downregulated_Cadmium
      WBPaper00057265:metaformin_downregulated_OP50-MR
      WBPaper00060100:SiNP_downregulated_mRNA
      WBPaper00060434:pH4.33_vs_pH6.33_downrgulated
      WBPaper00061405:S.aureus_downregulated_starvation
      WBPaper00061527:K07E1.1-Y71F9B.13_934
      WBPaper00061530:nhr-49(e2144)_upregulated
      WBPaper00061699:daf-18(ok480)_downregulated
      WBPaper00062056:lin-37(n758)_downregulated
      WBPaper00062056:met-2(n4256)_downregulated
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00062293:isp-1(qm150)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062446:nhr-8(hd117)_upregulated
      WBPaper00064306:Agaro-oligosaccharides_upregulated
      WBPaper00064532:pals-25(icb98)_downregulated
      WBPaper00064933:bcf-1(ylf1)_upregulated_transcript
      WBPaper00065835:Day5_vs_Day1_downregulated
      WBPaper00065835:Day11_vs_Day1_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
      cgc4489_group_9
      cgc4489_group_18
      WBPaper00006465:IV_ethanol_late_repression
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00032948:StarveUp2
      WBPaper00034757:up_by_oxidative_stress
      WBPaper00035227:heat_shock_regulated
      WBPaper00036123:Atrazine_regulated
      WBPaper00036123:Cadmium_regulated
      WBPaper00036123:Fluoranthene_regulated
      WBPaper00036286:Pattern_D
      WBPaper00038172:aak-2overexpression_down_regulated
      WBPaper00038172:tax-6null_up_regulated
      WBPaper00040184:hcf-1up_sir-2.1up_daf-2up
      WBPaper00040858:eQTL_regulated_aging
      WBPaper00041002:HF_3d_0.2mM_Up
      WBPaper00041002:HF_3d_2.0mM_Up
      WBPaper00041002:HQ_3d_0.2mM_Up
      WBPaper00041002:HQ_3d_2.0mM_Up
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00042331:a-SWCNTs_downregulated
      WBPaper00045015:nhr-25(RNAi)_downregulated
      WBPaper00045673:colistin_downregulated
      WBPaper00045960:L1-L4-lethargus_downregulated
      WBPaper00045960:L4-lethargus_downregulated
      WBPaper00047070:N2_UV_upregulated
      WBPaper00047070:xpa-1_UV_upregulated
      WBPaper00053236:daf-16(mgDF50)_regulated_Starved
      WBPaper00053236:Starvation_regulated_N2
    Interaction (43)
  Map_info: Positive: Positive_clone: T04A11 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: IV 5.97397
  Reference: WBPaper00038491
    WBPaper00055090
  Method: Gene