WormBase Tree Display for Gene: WBGene00011361
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| WBGene00011361 | SMap | S_parent | Sequence | CHROMOSOME_X | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | lyst-1 | Person_evidence | WBPerson253 | |||||
| Sequence_name | T01H10.8 | ||||||||
| Molecular_name | T01H10.8 | ||||||||
| T01H10.8.1 | |||||||||
| CE43291 | |||||||||
| Other_name | CELE_T01H10.8 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | lyst-1 | ||||||||
| DB_info | Database | AceView | gene | XM748 | |||||
| WormQTL | gene | WBGene00011361 | |||||||
| WormFlux | gene | WBGene00011361 | |||||||
| NDB | locus_tag | CELE_T01H10.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00011361|UniProtKB=G5EFC7 | |||||||
| family | PTHR13743 | ||||||||
| NCBI | gene | 181379 | |||||||
| RefSeq | protein | NM_077629.4 | |||||||
| TREEFAM | TREEFAM_ID | TF313658 | |||||||
| TrEMBL | UniProtAcc | G5EFC7 | |||||||
| UniProt_GCRP | UniProtAcc | G5EFC7 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 04 Sep 2015 11:19:37 | WBPerson2970 | Name_change | CGC_name | lyst-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lyst | ||||||||
| Allele (184) | |||||||||
| Strain | WBStrain00032215 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00017867 | ||||||||
| 00017868 | |||||||||
| 00017869 | |||||||||
| 00017870 | |||||||||
| Ortholog (26) | |||||||||
| Paralog | WBGene00004760 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00007752 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00018672 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | T01H10.8 encodes a BEACH domain-containing protein that is orthologous to the mammalian lysosomal trafficking regulator LYST which when mutated leads to Chediak-Higashi syndrome (CHS, OMIM:606897). | Paper_evidence | WBPaper00028987 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 30 Jul 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable protein kinase binding activity. Predicted to be involved in protein localization. Predicted to be located in cytosol and membrane. Expressed in neurons and pharyngeal cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T01H10.8 | |||||||
| Corresponding_CDS_history | T01H10.8:wp196 | ||||||||
| Corresponding_transcript | T01H10.8.1 | ||||||||
| Associated_feature | WBsf1007217 | ||||||||
| WBsf1007218 | |||||||||
| WBsf1007219 | |||||||||
| WBsf1023993 | |||||||||
| WBsf1023994 | |||||||||
| WBsf1023995 | |||||||||
| WBsf238042 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00001557 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00090881 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00018000 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00052172 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr12706 | ||||||||
| Expr1012999 | |||||||||
| Expr1035000 | |||||||||
| Expr1155803 | |||||||||
| Expr2013320 | |||||||||
| Expr2031552 | |||||||||
| Drives_construct | WBCnstr00022775 | ||||||||
| WBCnstr00030714 | |||||||||
| Construct_product | WBCnstr00030714 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (114) | |||||||||
| Interaction | WBInteraction000127494 | ||||||||
| WBInteraction000216545 | |||||||||
| WBInteraction000234199 | |||||||||
| WBInteraction000257645 | |||||||||
| WBInteraction000285620 | |||||||||
| WBInteraction000399331 | |||||||||
| WBInteraction000440959 | |||||||||
| Map_info | Map | X | Position | 7.00673 | |||||
| Positive | Positive_clone | T01H10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00049170 | |||||||||
| WBPaper00052074 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
