WormBase Tree Display for Gene: WBGene00011305
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| WBGene00011305 | SMap | S_parent | Sequence | R186 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | hrg-9 | Person_evidence | WBPerson15737 | |||||
| Sequence_name | R186.1 | ||||||||
| Molecular_name | R186.1 | ||||||||
| R186.1.1 | |||||||||
| CE12870 | |||||||||
| Other_name | CELE_R186.1 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | hrg-9 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 11 Mar 2021 09:37:10 | WBPerson1983 | Name_change | CGC_name | hrg-9 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | hrg | ||||||||
| Allele (32) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00073715 | ||||||||
| 00073716 | |||||||||
| 00073717 | |||||||||
| Ortholog (34) | |||||||||
| Paralog | WBGene00013587 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to be involved in Golgi organization and protein secretion. Predicted to be located in Golgi apparatus. Is an ortholog of human TANGO2 (transport and golgi organization 2 homolog). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Experimental_model | DOID:0060413 | Homo sapiens | Curator_confirmed | WBPerson324 | ||||
| Potential_model | DOID:0081386 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:25439) | |||||
| Disease_relevance | 22q11.2 deletion syndrome (22q11.2DS) is the most common human deletion syndrome caused by deletion of a small piece of chromosome 22, characterized by neurodevelopmental defects, schizophrenia, congenital cardiac and craniofacial abnormalites (includes DiGeorge Syndrome and velocardiofacial syndrome); the 22q11.2 deletion overlaps several protein-coding genes including TANGO2 (transport and golgi organization 2 homolog); C. elegans R186.1 encodes a putative ortholog of human TANGO2, providing a potential model system to study 22q11.2DS. | Homo sapiens | Paper_evidence | WBPaper00047004 | |||||
| Accession_evidence | OMIM | 611867 | |||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 17 Sep 2015 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R186.1 | |||||||
| Corresponding_transcript | R186.1.1 | ||||||||
| Other_sequence (12) | |||||||||
| Associated_feature | WBsf669537 | ||||||||
| WBsf1001674 | |||||||||
| WBsf1020630 | |||||||||
| WBsf234752 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00017890 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00000725 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00052010 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00034954 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr16356 | ||||||||
| Expr16358 | |||||||||
| Expr1019523 | |||||||||
| Expr1155650 | |||||||||
| Expr2005671 | |||||||||
| Expr2023887 | |||||||||
| Drives_construct | WBCnstr00030759 | ||||||||
| WBCnstr00042972 | |||||||||
| WBCnstr00042975 | |||||||||
| Construct_product | WBCnstr00030759 | ||||||||
| WBCnstr00042975 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (164) | |||||||||
| Interaction | WBInteraction000147507 | ||||||||
| WBInteraction000182222 | |||||||||
| WBInteraction000188676 | |||||||||
| WBInteraction000246163 | |||||||||
| WBInteraction000274064 | |||||||||
| WBInteraction000451741 | |||||||||
| WBInteraction000468598 | |||||||||
| WBInteraction000468903 | |||||||||
| Map_info | Map | V | Position | 4.76386 | |||||
| Positive | Positive_clone | R186 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064607 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
