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WormBase Tree Display for Gene: WBGene00011282

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Name Class

WBGene00011282SMapS_parentSequenceR74
IdentityVersion1
NameSequence_nameR74.8
Molecular_nameR74.8a
R74.8a.1
CE35361
R74.8b
CE37038
R74.8b.1
Other_nameCELE_R74.8Accession_evidenceNDBBX284603
Public_nameR74.8
DB_infoDatabaseAceViewgene3F297
WormQTLgeneWBGene00011282
WormFluxgeneWBGene00011282
NDBlocus_tagCELE_R74.8
PanthergeneCAEEL|WormBase=WBGene00011282|UniProtKB=O45722
familyPTHR40326
NCBIgene175544
RefSeqproteinNM_001027568.7
NM_001027567.7
TREEFAMTREEFAM_IDTF317959
TrEMBLUniProtAccQ6BEV8
O45722
UniProt_GCRPUniProtAccO45722
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:52WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (17)
RNASeq_FPKM (74)
Contained_in_operonCEOP3847
Ortholog (34)
ParalogWBGene00022462Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00019787Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00022206Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00045212Caenorhabditis elegansFrom_analysisPanther
Structured_descriptionAutomated_descriptionEnriched in M cell; germ line; germline precursor cell; neurons; and somatic gonad precursor based on microarray; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including glp-1; hsf-1; and gld-1 based on microarray; RNA-seq; and proteomic studies. Is affected by nine chemicals including Alovudine; stavudine; and Zidovudine based on RNA-seq; proteomic; and microarray studies. Is predicted to encode a protein with the following domain: Six-bladed beta-propeller, TolB-like.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSR74.8a
R74.8b
Corresponding_CDS_historyR74.8:wp108
Corresponding_transcriptR74.8a.1
R74.8b.1
Other_sequenceCJC05970_1
Tcir_isotig24415
CBC07183_1
Tcir_isotig21400
Associated_featureWBsf645072
WBsf645073
WBsf658803
WBsf658804
WBsf658805
WBsf658806
WBsf992059
WBsf992060
WBsf224703
WBsf224704
Experimental_infoRNAi_resultWBRNAi00017921Inferred_automaticallyRNAi_primary
WBRNAi00007687Inferred_automaticallyRNAi_primary
WBRNAi00052056Inferred_automaticallyRNAi_primary
WBRNAi00034981Inferred_automaticallyRNAi_primary
WBRNAi00005016Inferred_automaticallyRNAi_primary
Expr_patternExpr1014121
Expr1034959
Expr1155689
Expr2005686
Expr2023902
Drives_constructWBCnstr00030780
Construct_productWBCnstr00030780
Microarray_results (27)
Expression_clusterWBPaper00033065:cyc-1(RNAi)_downregulated
WBPaper00036375:enriched_in_PVD_OLL
WBPaper00037946:LIN-39_interacting
WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038118:aak-2(gt33)_upregulated
WBPaper00040209:B.thuringiensis_upregulated_MY15
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00044760:germline_specific
WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_downregulated
WBPaper00045050:csr-1(hypomorph)_downregulated
WBPaper00045417:128Q-huntingtin_downreglated
WBPaper00045521:Gender_Neutral
WBPaper00045571:germline-ablation_downregulated
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
WBPaper00048988:neuron_expressed
WBPaper00049498:npr-1(ur89)_regulated_6
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050686:glp-1(e2141)_downregulated
WBPaper00050743:elli-1(sam-3)_upregulated
WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:downregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00051039:germline_enriched
WBPaper00051245:epidermis_cytoplasm_expressed
WBPaper00051265:F1_morc-1(tm6048)_downregulated
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053302:alovudine_24h_regulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053302:zidovudine_24h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053321:embryo-to-L1_downregulated_nos-1(gv5)nos-2(RNAi)_SMARTseq
WBPaper00053321:PGCs_enriched_NuGen
WBPaper00053713:Starvation-induced_postdauer_vs_control_downregulated
WBPaper00055354:eat-2(ad1116)_upregulated
WBPaper00055354:Metformin_downregulated
WBPaper00055354:Rapamycin_upregulated
WBPaper00055354:Rifampicin_downregulated
WBPaper00055482:pmt-2(RNAi)_downregulated
WBPaper00055565:AVK_enriched
WBPaper00055648:germline_expressed
WBPaper00055971:nhl-2(ok818)_25C_upregulated
WBPaper00056034:pals-22(jy3)_downregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_downregulated_N2
WBPaper00056139:soil-microbiota_downregulated
WBPaper00056165:MINA-1_interacting_mRNA
WBPaper00056443:sek-1(km4)_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00058691:cfp-1(tm6369)_upregulated
WBPaper00058969:RIS_enriched
WBPaper00059174:MEG-3_interacting
WBPaper00059471:EGL-43_interacting
WBPaper00059664:srbc-48(ac23)_downregulated
WBPaper00059763:neuron_expressed
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060445:ikb-1(nr2027)_upregulated_L4
WBPaper00060445:nfki-1(cer1)_upregulated_L4
WBPaper00060683:hlh-11(ko1)_downregulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060909:atfs-1(cmh15)_upregulated
WBPaper00061007:HB101_downregulated
WBPaper00061007:S.aquatilis_downregulated
WBPaper00061340:AIB
WBPaper00061340:AIN
WBPaper00061340:AIY
WBPaper00061340:DA
WBPaper00061340:DD
WBPaper00061340:I5
WBPaper00061340:M_cell
WBPaper00061340:PVT
WBPaper00061340:RIV
WBPaper00061340:Z1_Z4
WBPaper00061341:28C_24h_downregulated
WBPaper00061466:nath-10(icb99)_downregulated
WBPaper00061466:nath-10(icb102)_downregulated
WBPaper00061527:let-99_22239-such-1
WBPaper00061527:trcs-2_5724-R11A8.7_17645
WBPaper00061651:VB01_enriched
WBPaper00061753:csr-1(tor159)_downregulated_25C
WBPaper00062123:GLH-1_interacting
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00062456:doxycycline_downregulated_CB4856_protein
WBPaper00062587:lsl-1(ljm1)_downregulated
WBPaper00062587:lsl-1(tm4769)_downregulated
WBPaper00064005:starvation_downregulated_aptf-1(gk794)_protein
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064315:mes-3(bn199)_downregulated_EGCs
WBPaper00064716:paraquat_upregulated
WBPaper00065096:25C_vs_20C_upregulated
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065373:Cisplatin_upregulated_WT
WBPaper00065373:sek-1(km4)_upregulated_cisplatin
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066110:tetraploid_vs_diploid_downregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
cgc4489_group_2
WBPaper00025032:cluster_4
WBPaper00025032:cluster_27
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00029437:dcr-1_downregulated
WBPaper00030839:Embryo_Pan_Neuronal
WBPaper00031252:AIN-1_IP_enriched
WBPaper00034757:down_by_oxidative_stress
WBPaper00035905:FBF-1_Associated
WBPaper00036286:Pattern_F
WBPaper00037611:RNP-8-associated
WBPaper00037695:LD_3-day
WBPaper00037901:GLD-1_mRNA_targets
WBPaper00038427:lin-54_germline_changed
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
WBPaper00041606:CE_B.thuringiensis-DB27_regulated
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00042128:gei-8(ok1671)_downregulated
WBPaper00042331:a-SWCNTs_downregulated
WBPaper00045263:0.1mM-paraquat_upregulated
WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
[cgc5767]:cluster_1
[cgc5767]:expression_class_M
[cgc5767]:expression_class_MD
[cgc5767]:expression_class_MD_pd(41_min)
[cgc5767]:expression_class_MD_pd(53_min)
[cgc5767]:expression_class_SM
[cgc5767]:expression_class_SMD
[cgc6390]:Cluster_E
[cgc6390]:oogenesis-enriched
SAGE_tagSAGE:ttgattgttaccgggggStrandAntisense
SAGE:ttgattgttaStrandAntisense
SAGE:aaatatttgcStrandAntisense
SAGE:caccagtttgStrandSense
Unambiguously_mapped
SAGE:ttgtaacgctgattcatStrandAntisense
SAGE:ctgccgccccStrandSense
Unambiguously_mapped
SAGE:ctgccgccccaaaacggStrandSense
Unambiguously_mapped
Interaction (211)
Map_infoPositivePositive_cloneR74Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionIII-3.66927
MethodGene