WormBase Tree Display for Gene: WBGene00011267
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| WBGene00011267 | SMap | S_parent | Sequence | R17 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | fbxb-85 | Person_evidence | WBPerson655 | |||||
| Sequence_name | R17.1 | ||||||||
| Molecular_name | R17.1 | ||||||||
| R17.1.1 | |||||||||
| CE16314 | |||||||||
| Other_name | CELE_R17.1 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | fbxb-85 | ||||||||
| DB_info | Database | AceView | gene | 3L936 | |||||
| WormQTL | gene | WBGene00011267 | |||||||
| WormFlux | gene | WBGene00011267 | |||||||
| NDB | locus_tag | CELE_R17.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00011267|UniProtKB=O18004 | |||||||
| family | PTHR22899 | ||||||||
| NCBI | gene | 187876 | |||||||
| RefSeq | protein | NM_066988.3 | |||||||
| TrEMBL | UniProtAcc | O18004 | |||||||
| UniProt_GCRP | UniProtAcc | O18004 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 12 Dec 2005 17:22:20 | WBPerson2970 | Name_change | CGC_name | fbxb-85 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | fbxb | ||||||||
| Allele (24) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (47) | |||||||||
| Paralog (144) | |||||||||
| Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function. | Paper_evidence | WBPaper00012854 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enriched in several structures, including ABplaapaaa; ABplapaaaap; ABplapaaapa; AVA; and NSM based on tiling array and single-cell RNA-seq studies. Is affected by several genes including daf-2; rrf-3; and eat-2 based on tiling array; RNA-seq; and microarray studies. Is affected by eleven chemicals including Mercuric Chloride; rotenone; and Psoralens based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: F-box domain; F-box associated; and F-box associated domain, type 2. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R17.1 | |||||||
| Corresponding_transcript | R17.1.1 | ||||||||
| Associated_feature | WBsf651488 | ||||||||
| WBsf655482 | |||||||||
| WBsf227529 | |||||||||
| WBsf227530 | |||||||||
| WBsf227531 | |||||||||
| WBsf227532 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00034951 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00006324 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00052002 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00017886 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1025146 | ||||||||
| Expr1034946 | |||||||||
| Expr1155644 | |||||||||
| Expr2011686 | |||||||||
| Expr2029925 | |||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (113) | |||||||||
| Interaction | WBInteraction000265899 | ||||||||
| WBInteraction000281547 | |||||||||
| WBInteraction000293107 | |||||||||
| WBInteraction000327678 | |||||||||
| WBInteraction000347492 | |||||||||
| WBInteraction000356671 | |||||||||
| WBInteraction000357214 | |||||||||
| WBInteraction000359609 | |||||||||
| WBInteraction000368872 | |||||||||
| WBInteraction000369771 | |||||||||
| WBInteraction000382331 | |||||||||
| WBInteraction000382666 | |||||||||
| WBInteraction000385607 | |||||||||
| WBInteraction000387226 | |||||||||
| WBInteraction000389655 | |||||||||
| WBInteraction000390723 | |||||||||
| WBInteraction000391687 | |||||||||
| WBInteraction000392687 | |||||||||
| WBInteraction000395251 | |||||||||
| WBInteraction000397816 | |||||||||
| WBInteraction000401586 | |||||||||
| WBInteraction000408380 | |||||||||
| WBInteraction000409904 | |||||||||
| WBInteraction000410648 | |||||||||
| WBInteraction000412536 | |||||||||
| WBInteraction000413147 | |||||||||
| WBInteraction000415082 | |||||||||
| WBInteraction000421591 | |||||||||
| WBInteraction000424527 | |||||||||
| WBInteraction000433631 | |||||||||
| WBInteraction000436014 | |||||||||
| WBInteraction000436606 | |||||||||
| WBInteraction000442773 | |||||||||
| WBInteraction000443444 | |||||||||
| WBInteraction000450381 | |||||||||
| WBInteraction000450990 | |||||||||
| WBInteraction000452938 | |||||||||
| WBInteraction000454401 | |||||||||
| WBInteraction000456910 | |||||||||
| WBInteraction000457012 | |||||||||
| WBInteraction000458874 | |||||||||
| Map_info | Map | III | Position | 5.42989 | Error | 0.006803 | |||
| Positive | Positive_clone | R17 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00012854 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
