WormBase Tree Display for Gene: WBGene00011195
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| WBGene00011195 | SMap | S_parent | Sequence | R10D12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | sao-1 | Paper_evidence | WBPaper00040544 | |||||
| Person_evidence | WBPerson215 | ||||||||
| Sequence_name | R10D12.14 | ||||||||
| Molecular_name (18) | |||||||||
| Other_name | CELE_R10D12.14 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | sao-1 | ||||||||
| DB_info | Database | AceView | gene | 5O445 | |||||
| WormQTL | gene | WBGene00011195 | |||||||
| WormFlux | gene | WBGene00011195 | |||||||
| NDB | locus_tag | CELE_R10D12.14 | |||||||
| NCBI | gene | 3565237 | |||||||
| RefSeq | protein | NM_001047686.4 | |||||||
| NM_001373150.2 | |||||||||
| NM_001392643.1 | |||||||||
| NM_001269621.3 | |||||||||
| NM_001269622.3 | |||||||||
| NM_001373151.3 | |||||||||
| SwissProt | UniProtAcc | C6KRN1 | |||||||
| TREEFAM | TREEFAM_ID | TF343597 | |||||||
| TrEMBL | UniProtAcc | A0A486WVM9 | |||||||
| A0A486WV16 | |||||||||
| UniProt_GCRP | UniProtAcc | C6KRN1 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 06 Jan 2012 13:49:20 | WBPerson2970 | Event | Acquires_merge | WBGene00004722 | ||||
| Name_change | CGC_name | sao-1 | |||||||
| Acquires_merge | WBGene00004722 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sao | ||||||||
| Allele (38) | |||||||||
| Strain | WBStrain00033104 | ||||||||
| WBStrain00037410 | |||||||||
| WBStrain00000045 | |||||||||
| WBStrain00000047 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00006943 | ||||||||
| 00006944 | |||||||||
| 00006945 | |||||||||
| 00006946 | |||||||||
| 00006947 | |||||||||
| 00006948 | |||||||||
| 00006949 | |||||||||
| 00006950 | |||||||||
| 00006951 | |||||||||
| Contained_in_operon | CEOP5408 | ||||||||
| Ortholog (24) | |||||||||
| Structured_description | Concise_description | sao-1 encodes a novel GYF domain-containing protein that is conserved amongst nematodes; maternally provided SAO-1 functions together with SEL-10, a component of an E3 ubiquitin ligase with which it physically interacts, to negatively regulate the Notch receptor signaling pathway in the early embryo; mutations in sao-1 also suppress early cytokinesis defects in rfl-1 mutant embryos (rfl-1 encodes an E1 activating enzyme in the protein neddylation pathway); a SAO-1::GFP fusion protein localizes to the cytoplasm, cell cortex, and cleavage furrow. | Paper_evidence | WBPaper00040544 | |||||
| WBPaper00033469 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 10 Jan 2012 00:00:00 | ||||||||
| Automated_description | Enables WD40-repeat domain binding activity. Involved in negative regulation of Notch signaling pathway and regulation of protein deneddylation. Located in cell cortex and cleavage furrow. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R10D12.14a | |||||||
| R10D12.14b | |||||||||
| R10D12.14c | |||||||||
| R10D12.14d | |||||||||
| R10D12.14e | |||||||||
| R10D12.14f | |||||||||
| Corresponding_transcript | R10D12.14a.1 | ||||||||
| R10D12.14b.1 | |||||||||
| R10D12.14c.1 | |||||||||
| R10D12.14d.1 | |||||||||
| R10D12.14e.1 | |||||||||
| R10D12.14f.1 | |||||||||
| Other_sequence | Dviv_isotig33092 | ||||||||
| CBC01150_1 | |||||||||
| CJC00575_1 | |||||||||
| DN190290.1 | |||||||||
| AAC00271_1 | |||||||||
| CBC06467_1 | |||||||||
| Acan_isotig19145 | |||||||||
| Associated_feature | WBsf662063 | ||||||||
| WBsf232853 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00051681 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00017691 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00007689 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00034812 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076609 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr8729 | ||||||||
| Expr1024355 | |||||||||
| Expr1034916 | |||||||||
| Expr1155356 | |||||||||
| Expr2015593 | |||||||||
| Expr2033828 | |||||||||
| Drives_construct | WBCnstr00030855 | ||||||||
| Construct_product | WBCnstr00007589 | ||||||||
| WBCnstr00013487 | |||||||||
| WBCnstr00030855 | |||||||||
| Microarray_results (26) | |||||||||
| Expression_cluster (109) | |||||||||
| SAGE_tag | SAGE:gtcgtaagcc | Strand | Sense | ||||||
| Unambiguously_mapped | |||||||||
| SAGE:gtcgtaagccacaccat | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| Interaction (814) | |||||||||
| WBProcess | WBbiopr:00000032 | ||||||||
| WBbiopr:00000072 | |||||||||
| Map_info | Map | V | Position | 5.86244 | |||||
| Positive | Positive_clone | R10D12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00026132 | ||||||||
| WBPaper00033469 | |||||||||
| WBPaper00034933 | |||||||||
| WBPaper00040544 | |||||||||
| WBPaper00043670 | |||||||||
| WBPaper00064644 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
