WormBase Tree Display for Gene: WBGene00011137

WBGene00011137 SMap: S_parent: Sequence: R08A2
  Identity: Version: 1
    Name: Sequence_name: R08A2.7
      Molecular_name: R08A2.7
        R08A2.7.1
        CE34959
      Other_name: CELE_R08A2.7 Accession_evidence: NDB BX284605
      Public_name: R08A2.7
    DB_info: Database: AceView gene 5P203
        WormQTL gene WBGene00011137
        WormFlux gene WBGene00011137
        NDB locus_tag CELE_R08A2.7
        Panther gene CAEEL|WormBase=WBGene00011137|UniProtKB=Q7YWU8
          family PTHR35373
        NCBI gene 3565485
        RefSeq protein NM_001028900.2
        TREEFAM TREEFAM_ID TF317480
        TrEMBL UniProtAcc Q7YWU8
        UniProt_GCRP UniProtAcc Q7YWU8
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:52 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (25)
    RNASeq_FPKM (74)
    Ortholog (24)
    Paralog: WBGene00020759 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00015947 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00019143 Caenorhabditis elegans From_analysis: Panther
    Structured_description: Automated_description: Enriched in neurons and sensory neurons based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; alg-1; and atfs-1 based on tiling array; microarray; and RNA-seq studies. Is affected by antimycin and cholesterol based on RNA-seq studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: R08A2.7
    Corresponding_transcript: R08A2.7.1
    Other_sequence: Oden_isotig28691
      OOC03792_1
    Associated_feature: WBsf1002114
      WBsf1020902
      WBsf232956
      WBsf232957
  Experimental_info: Expr_pattern: Expr1021874
      Expr1155199
      Expr2005481
      Expr2023702
    Drives_construct: WBCnstr00030902
    Construct_product: WBCnstr00030902
    Microarray_results (13)
    Expression_cluster: WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_larva_enriched
      WBPaper00037950:all-neurons_larva_SelectivelyEnriched
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00038438:D.coniospora_12hr_upregulated_RNAseq
      WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_downregulated_RNAseq
      WBPaper00042477:rsr-2(RNAi)_upregulated_TilingArray
      WBPaper00042561:smgl-1(RNAi)_upregulated
      WBPaper00044578:reduced-humidity_downregulated_microarray
      WBPaper00044736:flat_dev_expression
      WBPaper00045417:128Q-huntingtin_downreglated
      WBPaper00046509:htz-1(ok3099)_downregulated
      WBPaper00048988:daf-16(mu86)_upregulated_neuron
      WBPaper00048988:neuron_enriched
      WBPaper00048988:neuron_expressed
      WBPaper00050344:AFD-neuron_enriched
      WBPaper00050344:ASER-neuron_enriched
      WBPaper00050344:PLM-neuron_enriched
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053888:drh-3(rrr2)_upregulated
      WBPaper00054758:alg-1(gk204)_upregulated
      WBPaper00055648:male-CEM-neurons_expressed
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00056161:hermaphrodite_enriched_siRNA
      WBPaper00058725:sftb-1(cer6)_upregulated
      WBPaper00058725:sftb-1(cer39)_upregulated
      WBPaper00059027:neuron-synapses_depleted
      WBPaper00059728:5ug_cholesterol_upregulated
      WBPaper00060014:set-2(zr2012)_upregulated
      WBPaper00060459:bcat-1(RNAi)_upregulated
      WBPaper00060634:fhod-1(tm2363)_upregulated
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00060909:atfs-1(et18)_downregulated
      WBPaper00061340:AFD
      WBPaper00061340:AWC
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061424:Diet_MYb120_upregulated
      WBPaper00061651:AFD_enriched
      WBPaper00061651:AWB_enriched
      WBPaper00061651:AWC_OFF_enriched
      WBPaper00061651:AWC_ON_enriched
      WBPaper00061651:BAG_enriched
      WBPaper00061995:mter-4(syb3662syb3403)_downregulated
      WBPaper00062056:lin-36(we31)_downregulated
      WBPaper00062103:neuron_enriched
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062590:Aging_upregulated_neuron
      WBPaper00064509:static-magnetic-field_upregulated
      WBPaper00064850:glh-1(sam65)_upregulated
      WBPaper00064871:hypoxia_downregulated_F1
      WBPaper00064933:bcf-1(ylf1)_upregulated_transcript
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065158:25C_vs_15C_upregulated_AFD
      WBPaper00065158:AFD_enriched
      WBPaper00065581:hpk-1(pk1393)_upregulated
      WBPaper00065623:111
      WBPaper00065623:125
      WBPaper00065749:Heat-Shock_downregulated_N2
      WBPaper00065841:11_2
      WBPaper00065841:35_0
      WBPaper00065841:35_2
      WBPaper00065841:35_3
      WBPaper00065841:85_0
      WBPaper00065841:101_0
      WBPaper00042548:miRISC_enriched
  Map_info: Positive: Positive_clone: R08A2 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: V 6.71937
  Method: Gene