WormBase Tree Display for Gene: WBGene00011116

WBGene00011116 SMap: S_parent: Sequence: R07E5
  Identity: Version: 4
    Name: CGC_name: pdcd-2 Person_evidence: WBPerson1983
      Sequence_name: R07E5.10
      Molecular_name: R07E5.10
        R07E5.10.1
        CE18125
        R07E5.10.2
      Other_name: CELE_R07E5.10 Accession_evidence: NDB BX284603
      Public_name: pdcd-2
    DB_info: Database: WormQTL gene WBGene00011116
        WormFlux gene WBGene00011116
        NDB locus_tag CELE_R07E5.10
        Panther gene CAEEL|WormBase=WBGene00011116|UniProtKB=A5JYQ9
          family PTHR31792
        NCBI gene 259501
        RefSeq protein NM_065495.10
        TrEMBL UniProtAcc Q21826
        OMIM gene 300913
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:52 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 17 Nov 2005 15:24:21 WBPerson1983 Event: Acquires_merge: WBGene00011118
        3 22 Nov 2005 13:17:36 WBPerson2970 Name_change: CGC_name: pdcd-2
        4 06 Mar 2018 14:40:39 WBPerson4025 Event: Split_into: WBGene00303105
      Acquires_merge: WBGene00011118
      Split_into: WBGene00303105
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pdcd
    Allele (24)
    RNASeq_FPKM (74)
    GO_annotation: 00073021
      00118415
    Contained_in_operon: CEOP3188
      CEOP5630
    Ortholog (38)
    Paralog: WBGene00011115 Caenorhabditis elegans From_analysis: Panther
    Structured_description: Concise_description: This gene encodes a homolog of mammalian PROGRAMMED CELL DEATH 2 (PDCD2). Paper_evidence: WBPaper00004588
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable metal ion binding activity. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in X-linked myopathy with excessive autophagy. Is an ortholog of human VMA21 (vacuolar ATPase assembly factor VMA21). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0050760 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:22082)
  Molecular_info: Corresponding_CDS: R07E5.10
    Corresponding_CDS_history: R07E5.10a:wp264
      R07E5.10b:wp264
    Corresponding_transcript: R07E5.10.1
      R07E5.10.2
    Other_sequence (36)
    Associated_feature: WBsf226521
  Experimental_info: RNAi_result (41)
    Expr_pattern: Expr1025380
      Expr1034888
      Expr1155164
      Expr2014792
      Expr2033026
    Drives_construct: WBCnstr00030917
    Construct_product: WBCnstr00030917
    Microarray_results (34)
    Expression_cluster (127)
    Interaction (74)
  Map_info: Map: III Position: -3.17464 Error: 0.000394
    Positive: Positive_clone: R07E5 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00004588
    WBPaper00026830
    WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene