WormBase Tree Display for Gene: WBGene00011078

WBGene00011078 SMap: S_parent: Sequence: R07B1
  Identity: Version: 1
    Name: Sequence_name: R07B1.6
      Molecular_name: R07B1.6a
        R07B1.6a.1
        CE01632
        R07B1.6b
      Other_name: CELE_R07B1.6 Accession_evidence: NDB BX284606
      Public_name: R07B1.6
    DB_info: Database: AceView gene XK485
        WormQTL gene WBGene00011078
        WormFlux gene WBGene00011078
        NDB locus_tag CELE_R07B1.6
        Panther gene CAEEL|WormBase=WBGene00011078|UniProtKB=Q09420
          family PTHR21629
        NCBI gene 187647
        RefSeq protein NM_077253.4
            NR_160850.1
        SwissProt UniProtAcc Q09420
        UniProt_GCRP UniProtAcc Q09420
        RNAcentral URSid URS0000E60BDF
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:52 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (42)
    RNASeq_FPKM (74)
    Contained_in_operon: CEOPX180
      CEOP2738
    Ortholog (26)
    Paralog: WBGene00011077 Caenorhabditis elegans From_analysis: Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00012571 Caenorhabditis elegans From_analysis: Inparanoid_8
            Panther
      WBGene00011877 Caenorhabditis elegans From_analysis: Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00019306 Caenorhabditis elegans From_analysis: Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00012570 Caenorhabditis elegans From_analysis: Inparanoid_8
            Panther
      WBGene00016276 Caenorhabditis elegans From_analysis: Panther
      WBGene00011079 Caenorhabditis elegans From_analysis: Panther
      WBGene00138711 Caenorhabditis elegans From_analysis: Panther
    Structured_description: Automated_description: Enriched in several structures, including ABarpapaaa; arc ant V; hyp3; neurons; and socket cell based on microarray; tiling array; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and daf-12 based on microarray; tiling array; and RNA-seq studies. Is affected by ten chemicals including tryptophan; methylmercury hydroxide; and Zidovudine based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domain: C6 domain. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: R07B1.6a
    Corresponding_transcript: R07B1.6b
      R07B1.6a.1
  Experimental_info: RNAi_result: WBRNAi00051415 Inferred_automatically: RNAi_primary
      WBRNAi00017505 Inferred_automatically: RNAi_primary
      WBRNAi00051416 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1155105
      Expr2005441
      Expr2023662
    Drives_construct: WBCnstr00030948
    Construct_product: WBCnstr00030948
    Microarray_results (24)
    Expression_cluster: WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00036375:enriched_in_PVD_OLL
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00040560:hpl-2_L3_upregulated
      WBPaper00042194:Tryptophan_downregulated
      WBPaper00042561:smg-2(RNAi)_upregulated
      WBPaper00043945:MeHg_upregulated
      WBPaper00044736:oscillating_dev_expression
      WBPaper00045918:96h_infection_recovery_upregulated
      WBPaper00045974:NSM_enriched_totalRNA_tiling
      WBPaper00046012:tdp-1(ok803)_upregulated
      WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_20C
      WBPaper00050488:mir-34(OverExpression)_vs_N2_regulated_adult_20C
      WBPaper00050801:DAF-12_dauer_regulome
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050801:DPY-21_dauer_regulome
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
      WBPaper00053388:dauer_regulated_Cluster5
      WBPaper00053402:cco-1(RNAi)_downregulated
      WBPaper00053888:drh-3(rrr2)_downregulated
      WBPaper00055013:hmg-3(bar24)_downregulated
      WBPaper00055013:hmg-4(RNAi)_downregulated
      WBPaper00055013:spt-16(RNAi)_downregulated
      WBPaper00055354:eat-2(ad1116)_upregulated
      WBPaper00055354:Rapamycin-Metformin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rifampicin_upregulated
      WBPaper00055386:daf-2(e1370)_upregulated
      WBPaper00055386:eat-2(ad465)_downregulated
      WBPaper00056169:rrf-3(pk1426)_downregulated_L4
      WBPaper00056169:rrf-3(pk1426)_upregulated_L2
      WBPaper00056290:hsp-6(mg585)_upregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00057041:unc-70(cas983)_upregulated
      WBPaper00057068:ints-4(RNAi)_downregulated
      WBPaper00057068:numr-1(RNAi)_downregulated
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00058948:npr-8(ok1439)_downregulated_PA14
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
      WBPaper00059373:stt-3(RNAi)_upregulated
      WBPaper00059421:daf-1(m40);daf-3(mgDf90)_downregulated
      WBPaper00059421:daf-3(mgDf90)_downregulated
      WBPaper00059567:olrn-1(ums9)_regulated
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00060014:set-2(tm1630)_downregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060445:ikb-1(nr2027)_downregulated_L4
      WBPaper00060445:nfki-1(cer1)_downregulated_L4
      WBPaper00060909:atfs-1(cmh15)_downregulated
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061340:ant_arc_V
      WBPaper00061340:CEPso
      WBPaper00061340:hyp1V_and_ant_arc_V
      WBPaper00061340:hyp3
      WBPaper00061340:ILso
      WBPaper00061340:RIA
      WBPaper00061340:URA_parent
      WBPaper00061527:F53B1.6_3658-ZK829.3_3484
      WBPaper00061613:human-alpha-Synuclein(A53T)_upregulated
      WBPaper00061753:csr-1(tor159)_upregulated_25C
      WBPaper00062156:jmjd-5(zr1234)_upregulated
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062446:nhr-8(hd117)_upregulated
      WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
      WBPaper00064229:B.thuringiensis-Cry5Ba_upregulated
      WBPaper00064661:lpd-3(ok2138)_upregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065258:anchor-cell_enriched
      WBPaper00065746:eat-2(ad1113)_downregulated
      WBPaper00065746:tmc-1(rg1003)_upregulated
      WBPaper00065984:pals-17(syb3980)_downregulated
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      cgc4489_group_7
      WBPaper00031003:hlh_1_enriched
      WBPaper00034757:up_by_oxidative_stress
      WBPaper00035588:alg-1(-)_upregulated
      WBPaper00036123:Cadmium_regulated
      WBPaper00036286:Pattern_G
      WBPaper00038172:crh-1null_down_regulated
      WBPaper00038172:tax-6null_down_regulated
      WBPaper00038427:lin-54_embryo_changed
      WBPaper00040876:mir-35_downregulated
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00045673:colistin_upregulated
      WBPaper00046083:oga-1(ok1207)_OP50_downregulated
      WBPaper00046083:ogt-1(ok1474)_OP50_downregulated
      WBPaper00046083:pmk-1(km25)_OP50_downregulated
      WBPaper00047070:N2_starvation_downregulated
      WBPaper00047070:N2_UV_downregulated
      WBPaper00047070:xpa-1_UV_downregulated
      WBPaper00048989:N2_rapamycin_upregulated
      WBPaper00056330:mrps-5(RNAi)_upregulated
      [cgc6390]:Cluster_B
      [cgc6390]:male_sex-enriched
    Interaction: WBInteraction000306215
      WBInteraction000348265
      WBInteraction000432804
  Map_info: Positive: Positive_clone: R07B1 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: X 1.73038
  Method: Gene