WormBase Tree Display for Gene: WBGene00011074

WBGene00011074 SMap: S_parent: Sequence: R07A4
  Identity: Version: 1
    Name: Sequence_name: R07A4.3
      Molecular_name: R07A4.3
        R07A4.3.1
        CE43887
        R07A4.3.2
      Other_name: CELE_R07A4.3 Accession_evidence: NDB BX284606
      Public_name: R07A4.3
    DB_info: Database: AceView gene XL375
        WormQTL gene WBGene00011074
        WormFlux gene WBGene00011074
        NDB locus_tag CELE_R07A4.3
        NCBI gene 181270
        RefSeq protein NM_077397.5
        TrEMBL UniProtAcc Q21781
        UniProt_GCRP UniProtAcc Q21781
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:52 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (63)
    RNASeq_FPKM (74)
    Ortholog: WBGene00212891 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      CSP28.g5515 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g15968 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP32.g2082 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP39.g8501 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      Sp34_X0076200 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrX_pilon.g19945 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Enriched in PVM; hypodermis; intestine; and seam cell based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and daf-12 based on microarray and RNA-seq studies. Is affected by eight chemicals including Psoralens; allantoin; and Sirolimus based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: R07A4.3
    Corresponding_CDS_history: R07A4.3:wp204
    Corresponding_transcript: R07A4.3.1
      R07A4.3.2
    Associated_feature: WBsf1006810
      WBsf1006811
      WBsf236310
  Experimental_info: RNAi_result: WBRNAi00051407 Inferred_automatically: RNAi_primary
      WBRNAi00034673 Inferred_automatically: RNAi_primary
      WBRNAi00017498 Inferred_automatically: RNAi_primary
      WBRNAi00051408 Inferred_automatically: RNAi_primary
      WBRNAi00034672 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1018869
      Expr1155094
      Expr2005436
      Expr2023657
    Microarray_results (16)
    Expression_cluster: WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:hypodermis_larva_enriched
      WBPaper00037950:intestine_embryo_enriched
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
      WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
      WBPaper00044736:oscillating_dev_expression
      WBPaper00045774:clk-1_upregulated
      WBPaper00046024:sleep_downregulated_oscillating
      WBPaper00048971:daf-16(mgDf50)_downregulated_L1
      WBPaper00048988:neuron_expressed
      WBPaper00049368:daf-2(e1370)_upregulated
      WBPaper00049736:daf-2(e1370)_upregulated_15deg-then-25deg(12hr)
      WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_24-cell-embryo
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050801:DAF-12_dauer_regulome
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050801:DPY-21_dauer_regulome
      WBPaper00050990:seam_enriched
      WBPaper00050990:seam_expressed
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053295:lin-22(ot269)_upregulated
      WBPaper00053388:dauer_regulated_Cluster3
      WBPaper00053402:cco-1(RNAi)_upregulated
      WBPaper00053606:N2_vs_elt-2(ca15)_downregulated
      WBPaper00053810:daf-2(e1370)_upregulated
      WBPaper00053810:isp-1(qm150)_upregulated
      WBPaper00053810:sod-2(ok1030)_upregulated
      WBPaper00054758:alg-1(gk204)_upregulated
      WBPaper00055013:hmg-4(RNAi)_upregulated
      WBPaper00055013:spt-16(RNAi)_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
      WBPaper00055354:Rifampicin-Psora_downregulated
      WBPaper00055386:daf-2(e1370)_upregulated
      WBPaper00055827:daf-2(e1370)_upregulated
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056809:smn-1(ok355)_upregulated
      WBPaper00057068:ints-4(RNAi)_upregulated
      WBPaper00057068:ints-4(RNAi)_upregulated_Cadmium
      WBPaper00057068:numr-1(RNAi)_downregulated_Cadmium
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00059728:20ug_cholesterol_upregulated
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060273:isp-1(qm150)_upregulated
      WBPaper00060434:pH4.33_vs_pH6.33_downrgulated
      WBPaper00060445:ikb-1(nr2027)_downregulated_L1
      WBPaper00060634:fhod-1(tm2363)_upregulated
      WBPaper00060921:tdc-1(n3419)_downregulated
      WBPaper00061040:eat-2(ad1116)_upregulated
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
      WBPaper00061527:ckr-1-T09B9.3
      WBPaper00061651:PVM_enriched
      WBPaper00061699:daf-18(ok480)_downregulated
      WBPaper00061995:mter-4(syb3662syb3403)_downregulated
      WBPaper00062056:lin-37(n758)_downregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00064661:lpd-3(ok2138)_upregulated
      WBPaper00064933:bcf-1(ylf1)_upregulated_transcript
      WBPaper00065841:54_0
      WBPaper00065841:140_0
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066232:ash-2(RNAi)_upregulated_WT
      WBPaper00066232:hsf-1(RNAi)_downregulated_ash-2
      cgc4489_group_9
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00027342:alpha-Synuclein(A53T)_downregulated
      WBPaper00031252:AIN-1_IP_enriched
      WBPaper00031252:AIN-2_IP_enriched
      WBPaper00032948:FedUp
      WBPaper00032948:MoltOssilate
      WBPaper00035227:heat_shock_regulated
      WBPaper00036130:mir-243_up_regulated
      WBPaper00040821:Au-NP_regulated
      WBPaper00040858:eQTL_regulated_old
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00045437:Toxic-Se_upregulated
      WBPaper00046853:AOBr_LakeStobenseeAug_upregulated
      WBPaper00047070:N2_starvation_downregulated
      WBPaper00047070:N2_UV_downregulated
      WBPaper00047070:xpa-1_UV_downregulated
      WBPaper00047070:xpa-1_UV_upregulated
      WBPaper00053236:daf-16(mgDF50)_regulated_Starved
      WBPaper00056330:mrps-5(RNAi)_upregulated
    Interaction (33)
  Map_info: Positive: Positive_clone: R07A4 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: X 2.45091
  Method: Gene