WormBase Tree Display for Gene: WBGene00011003

WBGene00011003 SMap: S_parent: Sequence: R04B5
  Identity: Version: 1
    Name: Sequence_name: R04B5.5
      Molecular_name: R04B5.5
        R04B5.5.1
        CE06215
      Other_name: CELE_R04B5.5 Accession_evidence: NDB BX284605
      Public_name: R04B5.5
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:52 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (22)
    Strain: WBStrain00037671
      WBStrain00037708
    RNASeq_FPKM (74)
    GO_annotation: 00072473
      00072474
      00072475
      00072476
      00118318
    Ortholog: WBGene00030364 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            WormBase-Compara
      WBGene00030366 Caenorhabditis briggsae From_analysis: OrthoMCL
            Inparanoid_8
            WormBase-Compara
      WBGene00052653 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00150529 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00113508 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00190348 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00075253 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00225465 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g1249 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g7775 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g4035 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP26.g4036 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g14937 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g5164 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g18232 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g1039 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g12439 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g14252 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g22378 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g28625 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g8113 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g879 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00640.g13049 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_V.g18725 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Cnig_chr_V.g18727 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold410.g1026 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00032.g1805 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_13965 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_018424 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g05185 Oscheius tipulae From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g07623 Oscheius tipulae From_analysis: WormBase-Compara
      Sp34_50181500 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g15413 Caenorhabditis elegans From_analysis: WormBase-Compara
      SGD:S000004060 Saccharomyces cerevisiae From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      SGD:S000002405 Saccharomyces cerevisiae From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      SGD:S000003920 Saccharomyces cerevisiae From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      FB:FBgn0024289 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0022359 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040426-1231 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:11184 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:98266 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:3734 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog (11)
    Structured_description: Concise_description: R04B5.5 encodes one of two C. elegans sorbitol dehydrogense orthologs; by homology the product of R04B5.5 is predicted to catalyze the reversible oxidation of sorbitol to fructose in the presence of NAD+; in the embryo, an R04B5.5::gfp fusion is expressed in body wall muscle, gut, and tail hypodermis. Paper_evidence: WBPaper00031003
          Curator_confirmed: WBPerson1843
          Date_last_updated: 17 Nov 2008 00:00:00
      Automated_description: Predicted to enable L-iditol 2-dehydrogenase activity. Predicted to be involved in sorbitol catabolic process. Expressed in body wall musculature and intestine. Human ortholog(s) of this gene implicated in sorbitol dehydrogenase deficiency with peripheral neuropathy. Is an ortholog of human SORD (sorbitol dehydrogenase). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0081376 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:11184)
  Molecular_info: Corresponding_CDS: R04B5.5
    Corresponding_transcript: R04B5.5.1
    Other_sequence (43)
    Associated_feature: WBsf232328
  Experimental_info: RNAi_result: WBRNAi00034577 Inferred_automatically: RNAi_primary
      WBRNAi00017394 Inferred_automatically: RNAi_primary
      WBRNAi00051226 Inferred_automatically: RNAi_primary
      WBRNAi00075888 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr4917
      Expr1016393
      Expr1034823
      Expr1154931
      Expr2005365
      Expr2023586
    Drives_construct: WBCnstr00012330
      WBCnstr00031001
    Construct_product: WBCnstr00031001
    Microarray_results (20)
    Expression_cluster (170)
    Interaction (41)
  Map_info: Positive: Positive_clone: R04B5 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: V 2.27378
  Reference: WBPaper00031003
    WBPaper00038491
    WBPaper00055090
  Method: Gene