WormBase Tree Display for Gene: WBGene00010928
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| WBGene00010928 | SMap | S_parent | Sequence | M162 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | clec-258 | Person_evidence | WBPerson2531 | |||||
| Sequence_name | M162.2 | ||||||||
| Molecular_name | M162.2 | ||||||||
| M162.2.1 | |||||||||
| CE18892 | |||||||||
| Other_name | CELE_M162.2 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | clec-258 | ||||||||
| DB_info | Database | AceView | gene | 5U251 | |||||
| WormQTL | gene | WBGene00010928 | |||||||
| WormFlux | gene | WBGene00010928 | |||||||
| NDB | locus_tag | CELE_M162.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00010928|UniProtKB=Q9XUC9 | |||||||
| family | PTHR23062 | ||||||||
| NCBI | gene | 187486 | |||||||
| RefSeq | protein | NM_075435.3 | |||||||
| TrEMBL | UniProtAcc | Q9XUC9 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XUC9 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 09 Oct 2007 15:40:27 | WBPerson2970 | Name_change | CGC_name | clec-258 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | clec | ||||||||
| Allele (33) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (14) | |||||||||
| Paralog (39) | |||||||||
| Structured_description | Automated_description | Enriched in several structures, including ABalpapppa; ABarapappa; ABplpapppa; mechanosensory neurons; and pharynx based on microarray; tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; skn-1; and glp-1 based on microarray and RNA-seq studies. Is affected by twenty-seven chemicals including 1-methylnicotinamide; rotenone; and Tunicamycin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: C-type lectin-like/link domain superfamily; Lectin C-type domain; C-type lectin-like; and C-type lectin fold. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | M162.2 | |||||||
| Corresponding_transcript | M162.2.1 | ||||||||
| Associated_feature | WBsf233201 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00050979 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00034460 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1021221 | ||||||||
| Expr1154685 | |||||||||
| Expr2010149 | |||||||||
| Expr2028393 | |||||||||
| Drives_construct | WBCnstr00031047 | ||||||||
| Construct_product | WBCnstr00031047 | ||||||||
| Microarray_results (15) | |||||||||
| Expression_cluster (207) | |||||||||
| Interaction | WBInteraction000031330 | ||||||||
| WBInteraction000323490 | |||||||||
| WBInteraction000398413 | |||||||||
| Map_info | Map | V | Position | 23.423 | Error | 0.012094 | |||
| Positive | Positive_clone | M162 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031686 | ||||||||
| WBPaper00065681 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
