WormBase Tree Display for Gene: WBGene00010896
expand all nodes | collapse all nodes | view schema
| WBGene00010896 | SMap | S_parent | Sequence | M28 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | snu-13 | |||||||
| Sequence_name | M28.5 | ||||||||
| Molecular_name | M28.5 | ||||||||
| M28.5.1 | |||||||||
| CE02283 | |||||||||
| Other_name | phi-9 | Person_evidence | WBPerson2582 | ||||||
| CELE_M28.5 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | snu-13 | ||||||||
| DB_info | Database | AceView | gene | 2K948 | |||||
| WormQTL | gene | WBGene00010896 | |||||||
| WormFlux | gene | WBGene00010896 | |||||||
| NDB | locus_tag | CELE_M28.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00010896|UniProtKB=Q21568 | |||||||
| family | PTHR23105 | ||||||||
| NCBI | gene | 174645 | |||||||
| RefSeq | protein | NM_001393180.1 | |||||||
| SwissProt | UniProtAcc | Q21568 | |||||||
| TREEFAM | TREEFAM_ID | TF300184 | |||||||
| UniProt_GCRP | UniProtAcc | Q21568 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 17 Mar 2005 13:54:35 | WBPerson2970 | Name_change | Other_name | phi-9 | ||||
| 3 | 11 Mar 2021 09:37:10 | WBPerson1983 | Name_change | CGC_name | snu-13 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | snu | ||||||||
| Allele (16) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (18) | |||||||||
| Contained_in_operon | CEOP2500 | ||||||||
| Ortholog (40) | |||||||||
| Paralog | WBGene00004412 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00004419 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00009993 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00012964 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| Panther | |||||||||
| WBGene00017997 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Automated_description | Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome; maturation of LSU-rRNA; and maturation of SSU-rRNA. Predicted to be located in nucleolus. Predicted to be part of ribonucleoprotein complex. Is an ortholog of human SNU13 (small nuclear ribonucleoprotein 13). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | M28.5 | |||||||
| Corresponding_transcript | M28.5.1 | ||||||||
| Other_sequence | ACC11443_1 | ||||||||
| HC00501 | |||||||||
| MI02128 | |||||||||
| Dviv_isotig34802 | |||||||||
| MI01595 | |||||||||
| Tcol_isotig10537 | |||||||||
| MAC00994_1 | |||||||||
| AA294041.1 | |||||||||
| Hbac_isotig00818 | |||||||||
| Tcir_isotig03570 | |||||||||
| MPC01687_1 | |||||||||
| PP00565 | |||||||||
| CBC06290_1 | |||||||||
| NB06486 | |||||||||
| MJC04549_1 | |||||||||
| MP00350 | |||||||||
| GR18397 | |||||||||
| Tcol_isotig10536 | |||||||||
| CN478184.1 | |||||||||
| CN478259.1 | |||||||||
| AE01775 | |||||||||
| EX010599.1 | |||||||||
| MI05268 | |||||||||
| GO250241.1 | |||||||||
| OOC03748_1 | |||||||||
| EX013709.1 | |||||||||
| HGC05060_1 | |||||||||
| BMC00707_1 | |||||||||
| DAC00534_1 | |||||||||
| Oden_isotig24242 | |||||||||
| EY463560.1 | |||||||||
| HC02067 | |||||||||
| MA01687 | |||||||||
| ES742359.1 | |||||||||
| CD374201.1 | |||||||||
| BMC11741_1 | |||||||||
| BXC02946_1 | |||||||||
| ES744672.1 | |||||||||
| GRC05025_1 | |||||||||
| GR977833.1 | |||||||||
| FG355380.1 | |||||||||
| PPC00100_1 | |||||||||
| Dviv_isotig26963 | |||||||||
| AYC00543_1 | |||||||||
| AI511520.1 | |||||||||
| GR18398 | |||||||||
| CD374179.1 | |||||||||
| Name_isotig05759 | |||||||||
| Acan_isotig07301 | |||||||||
| JI179661.1 | |||||||||
| BMC11740_1 | |||||||||
| NBC00407_1 | |||||||||
| Acan_isotig14991 | |||||||||
| Name_isotig03617 | |||||||||
| MJ05056 | |||||||||
| EX007850.1 | |||||||||
| CJC01553_1 | |||||||||
| SC00626 | |||||||||
| BF727634.1 | |||||||||
| Hbac_isotig00819 | |||||||||
| WBC00171_1 | |||||||||
| DA00230 | |||||||||
| ES412170.1 | |||||||||
| HCC00329_1 | |||||||||
| AA294124.1 | |||||||||
| GRC03888_1 | |||||||||
| JK315306.1 | |||||||||
| MIC01981_1 | |||||||||
| CJC12281_1 | |||||||||
| FG583784.1 | |||||||||
| HG00588 | |||||||||
| NB07515 | |||||||||
| OVC00889_1 | |||||||||
| CD374186.1 | |||||||||
| MIC04582_1 | |||||||||
| EY458513.1 | |||||||||
| HBC05929_1 | |||||||||
| Tcir_isotig03569 | |||||||||
| CD374600.1 | |||||||||
| CRC10247_1 | |||||||||
| Associated_feature | WBsf650515 | ||||||||
| WBsf989419 | |||||||||
| WBsf223825 | |||||||||
| WBsf223826 | |||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern | Expr1014225 | ||||||||
| Expr1034779 | |||||||||
| Expr1154736 | |||||||||
| Expr2005274 | |||||||||
| Expr2023493 | |||||||||
| Drives_construct | WBCnstr00031071 | ||||||||
| Construct_product | WBCnstr00031071 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (175) | |||||||||
| Interaction (246) | |||||||||
| Map_info | Map | II | Position | 3.12292 | |||||
| Positive | Positive_clone | M28 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031949 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00062599 | |||||||||
| WBPaper00063976 | |||||||||
| WBPaper00064632 | |||||||||
| WBPaper00065012 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
