WormBase Tree Display for Gene: WBGene00010587
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| WBGene00010587 | SMap | S_parent | Sequence | K05C4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | sol-2 | Paper_evidence | WBPaper00041519 | |||||
| Person_evidence | WBPerson404 | ||||||||
| Sequence_name | K05C4.11 | ||||||||
| Molecular_name | K05C4.11 | ||||||||
| K05C4.11.1 | |||||||||
| CE19979 | |||||||||
| K05C4.11.2 | |||||||||
| Other_name | CELE_K05C4.11 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | sol-2 | ||||||||
| DB_info | Database | AceView | gene | 1P314 | |||||
| WormQTL | gene | WBGene00010587 | |||||||
| WormFlux | gene | WBGene00010587 | |||||||
| NDB | locus_tag | CELE_K05C4.11 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00010587|UniProtKB=Q9XUU2 | |||||||
| family | PTHR45645 | ||||||||
| NCBI | gene | 173336 | |||||||
| RefSeq | protein | NM_061159.6 | |||||||
| TREEFAM | TREEFAM_ID | TF318542 | |||||||
| TrEMBL | UniProtAcc | Q9XUU2 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XUU2 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 28 Sep 2012 14:29:00 | WBPerson2970 | Name_change | CGC_name | sol-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sol | ||||||||
| Allele (99) | |||||||||
| Strain | WBStrain00036455 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Ortholog (20) | |||||||||
| Paralog (48) | |||||||||
| Structured_description | Concise_description | sol-2 encodes a CUB and LDLa domain-containing type I transmembrane protein homologous to the vertebrate Neto proteins; SOL-2 functions as an auxiliary protein that positively regulates activity of the AMPA-subtype ionotropic glutamate receptor, GLR-1, and thus regulates glutamate-mediated synaptic transmission and behavior; a sol-2::GFP promoter fusion is expressed in head and tail neurons, including command interneurons and neurons that also express GLR-1 and SOL-1. | Paper_evidence | WBPaper00041519 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 13 Oct 2012 00:00:00 | ||||||||
| Automated_description | Enables channel regulator activity. Involved in several processes, including hyperosmotic response; positive regulation of glutamatergic synaptic transmission; and thigmotaxis. Located in neuron projection membrane. Part of ionotropic glutamate receptor complex. Expressed in command interneuron; head neurons; and tail neurons. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | K05C4.11 | |||||||
| Corresponding_transcript | K05C4.11.1 | ||||||||
| K05C4.11.2 | |||||||||
| Other_sequence | Dviv_isotig28068 | ||||||||
| JI170916.1 | |||||||||
| CJC16811_1 | |||||||||
| Associated_feature | WBsf665153 | ||||||||
| WBsf986215 | |||||||||
| WBsf986216 | |||||||||
| WBsf986217 | |||||||||
| WBsf1011284 | |||||||||
| WBsf220647 | |||||||||
| WBsf220648 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00049971 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00003926 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00049972 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00033981 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00033982 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr10580 | ||||||||
| Expr1022202 | |||||||||
| Expr1034626 | |||||||||
| Expr1153667 | |||||||||
| Expr2016003 | |||||||||
| Expr2034238 | |||||||||
| Drives_construct | WBCnstr00017006 | ||||||||
| WBCnstr00019919 | |||||||||
| WBCnstr00019920 | |||||||||
| Construct_product | WBCnstr00019919 | ||||||||
| WBCnstr00019920 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (172) | |||||||||
| Interaction | WBInteraction000456897 | ||||||||
| WBInteraction000522758 | |||||||||
| WBInteraction000522759 | |||||||||
| Map_info | Map | I | Position | 26.4855 | |||||
| Positive | Positive_clone | K05C4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00041519 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00062388 | |||||||||
| WBPaper00064190 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
