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WormBase Tree Display for Gene: WBGene00010484

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Name Class

WBGene00010484SMapS_parentSequenceK01H12
IdentityVersion2
NameCGC_namedph-3Person_evidenceWBPerson237
Sequence_nameK01H12.1
Molecular_nameK01H12.1a
K01H12.1a.1
CE03453
K01H12.1b
CE44584
K01H12.1b.1
Other_nameCELE_K01H12.1Accession_evidenceNDBBX284604
Public_namedph-3
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:51WBPerson1971EventImportedInitial conversion from CDS class of WS125
218 Aug 2009 11:24:59WBPerson9133Name_changeCGC_namedph-3
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classdph
Allele (12)
StrainWBStrain00026526
RNASeq_FPKM (74)
GO_annotation00007431
00070278
00070279
00070280
00070281
00070282
00070283
00070284
OrthologWBGene00069148Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00041179Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00115539Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00152306Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00153526Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00224998Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g7934Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g8942Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g1148Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g11850Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g3923Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g15704Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g14122Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g9979Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g22313Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g11959Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_01184.g15920Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-dph-3Caenorhabditis nigoniFrom_analysisWormBase-Compara
FL83_14128Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_013231Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g03035Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g14133Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_40249700Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g11386Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00240737Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00258880Strongyloides rattiFrom_analysisWormBase-Compara
SGD:S000007587Saccharomyces cerevisiaeFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
FB:FBgn0037883Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-050522-545Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:27717Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:16136Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1922658Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1590566Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
Structured_descriptionConcise_descriptiondph-3 encodes a small protein conserved in diverse eukaryotes, with a CSL motif (a probable zinc finger, sometimes found associated with the N-terminal domain of DnaJ protein); DPH-3 is probably a small subunit or ancillary protein of RNA polymerase II Elongator or of a hypothetical diphthamide synthase complex; DPH-3 is orthologous to mammalian DESR1 (diphtheria toxin and Pseudomonas exotoxin A sensitivity required gene 1) and S. cerevisiae KTI11; DESR1, and probably KTI11, enables the first step in posttranslational modification of histidine to dipthamide.Paper_evidenceWBPaper00005654
WBPaper00013055
WBPaper00013218
Curator_confirmedWBPerson1843
WBPerson567
Date_last_updated18 Aug 2009 00:00:00
Automated_descriptionPredicted to enable ferrous iron binding activity and iron chaperone activity. Predicted to be involved in protein histidyl modification to diphthamide and tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation. Located in nucleus. Is an ortholog of human DPH3 (diphthamide biosynthesis 3) and DPH3P1 (diphthamide biosynthesis 3 pseudogene 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSK01H12.1a
K01H12.1b
Corresponding_transcriptK01H12.1a.1
K01H12.1b.1
Other_sequence (56)
Associated_featureWBsf646248
WBsf228860
Transcription_factorWBTranscriptionFactor000379
Experimental_infoRNAi_resultWBRNAi00025838Inferred_automaticallyRNAi_primary
WBRNAi00027396Inferred_automaticallyRNAi_primary
WBRNAi00016414Inferred_automaticallyRNAi_primary
WBRNAi00025839Inferred_automaticallyRNAi_primary
WBRNAi00092977Inferred_automaticallyRNAi_primary
WBRNAi00115818Inferred_automaticallyRNAi_primary
WBRNAi00049641Inferred_automaticallyRNAi_primary
WBRNAi00033835Inferred_automaticallyRNAi_primary
Expr_patternExpr9502
Expr1019874
Expr1034578
Expr1153368
Expr2011049
Expr2029286
Drives_constructWBCnstr00031386
Construct_productWBCnstr00014067
WBCnstr00031386
Microarray_results (21)
Expression_cluster (121)
Interaction (49)
Map_infoMapIVPosition4.37903Error0.001128
PositivePositive_cloneK01H12Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00027309
WBPaper00036232
WBPaper00038444
WBPaper00038491
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene