WormBase Tree Display for Gene: WBGene00010484
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| WBGene00010484 | SMap | S_parent | Sequence | K01H12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | dph-3 | Person_evidence | WBPerson237 | |||||
| Sequence_name | K01H12.1 | ||||||||
| Molecular_name | K01H12.1a | ||||||||
| K01H12.1a.1 | |||||||||
| CE03453 | |||||||||
| K01H12.1b | |||||||||
| CE44584 | |||||||||
| K01H12.1b.1 | |||||||||
| Other_name | CELE_K01H12.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | dph-3 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 18 Aug 2009 11:24:59 | WBPerson9133 | Name_change | CGC_name | dph-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | dph | ||||||||
| Allele (12) | |||||||||
| Strain | WBStrain00026526 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00007431 | ||||||||
| 00070278 | |||||||||
| 00070279 | |||||||||
| 00070280 | |||||||||
| 00070281 | |||||||||
| 00070282 | |||||||||
| 00070283 | |||||||||
| 00070284 | |||||||||
| Ortholog (33) | |||||||||
| Structured_description | Concise_description | dph-3 encodes a small protein conserved in diverse eukaryotes, with a CSL motif (a probable zinc finger, sometimes found associated with the N-terminal domain of DnaJ protein); DPH-3 is probably a small subunit or ancillary protein of RNA polymerase II Elongator or of a hypothetical diphthamide synthase complex; DPH-3 is orthologous to mammalian DESR1 (diphtheria toxin and Pseudomonas exotoxin A sensitivity required gene 1) and S. cerevisiae KTI11; DESR1, and probably KTI11, enables the first step in posttranslational modification of histidine to dipthamide. | Paper_evidence | WBPaper00005654 | |||||
| WBPaper00013055 | |||||||||
| WBPaper00013218 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 18 Aug 2009 00:00:00 | ||||||||
| Automated_description | Predicted to enable ferrous iron binding activity and iron chaperone activity. Predicted to be involved in protein histidyl modification to diphthamide and tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation. Located in nucleus. Is an ortholog of human DPH3 (diphthamide biosynthesis 3) and DPH3P1 (diphthamide biosynthesis 3 pseudogene 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | K01H12.1a | |||||||
| K01H12.1b | |||||||||
| Corresponding_transcript | K01H12.1a.1 | ||||||||
| K01H12.1b.1 | |||||||||
| Other_sequence (56) | |||||||||
| Associated_feature | WBsf646248 | ||||||||
| WBsf228860 | |||||||||
| Transcription_factor | WBTranscriptionFactor000379 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00025838 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00027396 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00016414 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00025839 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00092977 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00115818 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00049641 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00033835 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9502 | ||||||||
| Expr1019874 | |||||||||
| Expr1034578 | |||||||||
| Expr1153368 | |||||||||
| Expr2011049 | |||||||||
| Expr2029286 | |||||||||
| Drives_construct | WBCnstr00031386 | ||||||||
| Construct_product | WBCnstr00014067 | ||||||||
| WBCnstr00031386 | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (121) | |||||||||
| Interaction | WBInteraction000109978 | ||||||||
| WBInteraction000109994 | |||||||||
| WBInteraction000110710 | |||||||||
| WBInteraction000115367 | |||||||||
| WBInteraction000120646 | |||||||||
| WBInteraction000121753 | |||||||||
| WBInteraction000121865 | |||||||||
| WBInteraction000177563 | |||||||||
| WBInteraction000178422 | |||||||||
| WBInteraction000185744 | |||||||||
| WBInteraction000192246 | |||||||||
| WBInteraction000216015 | |||||||||
| WBInteraction000219723 | |||||||||
| WBInteraction000219880 | |||||||||
| WBInteraction000231537 | |||||||||
| WBInteraction000236664 | |||||||||
| WBInteraction000245285 | |||||||||
| WBInteraction000258485 | |||||||||
| WBInteraction000258616 | |||||||||
| WBInteraction000275770 | |||||||||
| WBInteraction000277269 | |||||||||
| WBInteraction000314442 | |||||||||
| WBInteraction000317606 | |||||||||
| WBInteraction000347299 | |||||||||
| WBInteraction000356974 | |||||||||
| WBInteraction000357917 | |||||||||
| WBInteraction000370639 | |||||||||
| WBInteraction000374054 | |||||||||
| WBInteraction000381392 | |||||||||
| WBInteraction000392643 | |||||||||
| WBInteraction000396485 | |||||||||
| WBInteraction000397674 | |||||||||
| WBInteraction000401456 | |||||||||
| WBInteraction000409163 | |||||||||
| WBInteraction000415860 | |||||||||
| WBInteraction000419445 | |||||||||
| WBInteraction000421050 | |||||||||
| WBInteraction000422218 | |||||||||
| WBInteraction000422468 | |||||||||
| WBInteraction000425657 | |||||||||
| WBInteraction000432916 | |||||||||
| WBInteraction000439028 | |||||||||
| WBInteraction000439192 | |||||||||
| WBInteraction000443231 | |||||||||
| WBInteraction000446290 | |||||||||
| WBInteraction000500297 | |||||||||
| WBInteraction000500299 | |||||||||
| WBInteraction000500300 | |||||||||
| WBInteraction000500301 | |||||||||
| Map_info | Map | IV | Position | 4.37903 | Error | 0.001128 | |||
| Positive | Positive_clone | K01H12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00036232 | |||||||||
| WBPaper00038444 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
