WormBase Tree Display for Gene: WBGene00010484
expand all nodes | collapse all nodes | view schema
WBGene00010484 | SMap | S_parent | Sequence | K01H12 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | dph-3 | Person_evidence | WBPerson237 | |||||
Sequence_name | K01H12.1 | ||||||||
Molecular_name | K01H12.1a | ||||||||
K01H12.1a.1 | |||||||||
CE03453 | |||||||||
K01H12.1b | |||||||||
CE44584 | |||||||||
K01H12.1b.1 | |||||||||
Other_name | CELE_K01H12.1 | Accession_evidence | NDB | BX284604 | |||||
Public_name | dph-3 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 18 Aug 2009 11:24:59 | WBPerson9133 | Name_change | CGC_name | dph-3 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | dph | ||||||||
Allele (12) | |||||||||
Strain | WBStrain00026526 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00007431 | ||||||||
00070278 | |||||||||
00070279 | |||||||||
00070280 | |||||||||
00070281 | |||||||||
00070282 | |||||||||
00070283 | |||||||||
00070284 | |||||||||
Ortholog (33) | |||||||||
Structured_description | Concise_description | dph-3 encodes a small protein conserved in diverse eukaryotes, with a CSL motif (a probable zinc finger, sometimes found associated with the N-terminal domain of DnaJ protein); DPH-3 is probably a small subunit or ancillary protein of RNA polymerase II Elongator or of a hypothetical diphthamide synthase complex; DPH-3 is orthologous to mammalian DESR1 (diphtheria toxin and Pseudomonas exotoxin A sensitivity required gene 1) and S. cerevisiae KTI11; DESR1, and probably KTI11, enables the first step in posttranslational modification of histidine to dipthamide. | Paper_evidence | WBPaper00005654 | |||||
WBPaper00013055 | |||||||||
WBPaper00013218 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
WBPerson567 | |||||||||
Date_last_updated | 18 Aug 2009 00:00:00 | ||||||||
Automated_description | Predicted to enable ferrous iron binding activity and iron chaperone activity. Predicted to be involved in protein histidyl modification to diphthamide and tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation. Located in nucleus. Is an ortholog of human DPH3 (diphthamide biosynthesis 3) and DPH3P1 (diphthamide biosynthesis 3 pseudogene 1). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | K01H12.1a | |||||||
K01H12.1b | |||||||||
Corresponding_transcript | K01H12.1a.1 | ||||||||
K01H12.1b.1 | |||||||||
Other_sequence (56) | |||||||||
Associated_feature | WBsf646248 | ||||||||
WBsf228860 | |||||||||
Transcription_factor | WBTranscriptionFactor000379 | ||||||||
Experimental_info | RNAi_result | WBRNAi00025838 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00027396 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00016414 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00025839 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00092977 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00115818 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00049641 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00033835 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr9502 | ||||||||
Expr1019874 | |||||||||
Expr1034578 | |||||||||
Expr1153368 | |||||||||
Expr2011049 | |||||||||
Expr2029286 | |||||||||
Drives_construct | WBCnstr00031386 | ||||||||
Construct_product | WBCnstr00014067 | ||||||||
WBCnstr00031386 | |||||||||
Microarray_results (21) | |||||||||
Expression_cluster (121) | |||||||||
Interaction (49) | |||||||||
Map_info | Map | IV | Position | 4.37903 | Error | 0.001128 | |||
Positive | Positive_clone | K01H12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00027309 | ||||||||
WBPaper00036232 | |||||||||
WBPaper00038444 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |