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WormBase Tree Display for Gene: WBGene00010472

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Name Class

WBGene00010472SMapS_parentSequenceC54D10
IdentityVersion2
NameCGC_namecdr-7Person_evidenceWBPerson184
Sequence_nameK01D12.13
Molecular_nameK01D12.13a
K01D12.13a.1
CE38388
K01D12.13b
CE38389
K01D12.13b.1
Other_nameCELE_K01D12.13Accession_evidenceNDBBX284605
Public_namecdr-7
DB_infoDatabaseWormQTLgeneWBGene00010472
NDBlocus_tagCELE_K01D12.13
PanthergeneCAEEL|WormBase=WBGene00010472|UniProtKB=G5EBH4
familyPTHR12289
NCBIgene24104698
RefSeqproteinNM_001307795.3
NM_001307735.3
TREEFAMTREEFAM_IDTF314915
TrEMBLUniProtAccQ21097
G5EBH4
UniProt_GCRPUniProtAccG5EBH4
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:51WBPerson1971EventImportedInitial conversion from CDS class of WS125
208 Nov 2004 10:58:06WBPerson2970Name_changeCGC_namecdr-7
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcdr
Allele (52)
RNASeq_FPKM (74)
GO_annotation00009590
OrthologWBGene00035988Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00041832Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00140393Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00109500Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00106431Pristionchus pacificusFrom_analysisInparanoid_8
WormBase-Compara
WBGene00106436Pristionchus pacificusFrom_analysisInparanoid_8
WormBase-Compara
WBGene00092927Pristionchus pacificusFrom_analysisOMA
WBGene00100936Pristionchus pacificusFrom_analysisInparanoid_8
WormBase-Compara
CBOVI.g865Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g8565Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g8566Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g8567Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g18892Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g5014Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g18561Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP32.g16199Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g10083Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g13445Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g8950Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g8951Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g8952Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g8953Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g8954Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g1986Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g18427Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00184.g6465Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_V.g18870Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold600.g5408Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_01739.g22833Caenorhabditis sinicaFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g01436Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g08548Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g10255Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g13920Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g13921Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g13922Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g7461Panagrellus redivivusFrom_analysisWormBase-Compara
chrV_pilon.g16007Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00105058Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00109501Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00110985Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00279003Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00279076Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00279147Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00279440Pristionchus pacificusFrom_analysisWormBase-Compara
ZFIN:ZDB-GENE-100922-19Danio rerioFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
ZFIN:ZDB-GENE-100422-7Danio rerioFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
MGI:1923382Mus musculusFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
RGD:1562449Rattus norvegicusFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
Paralog (12)
Structured_descriptionAutomated_descriptionPredicted to be located in cytoplasm.Paper_evidenceWBPaper00065943
Curator_confirmed (2)
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSK01D12.13a
K01D12.13b
Corresponding_CDS_historyK01D12.13:wp102
K01D12.13:wp141
Corresponding_transcriptK01D12.13a.1
K01D12.13b.1
Associated_featureWBsf653217
WBsf234675
Experimental_infoRNAi_resultWBRNAi00016395Inferred_automaticallyRNAi_primary
WBRNAi00049614Inferred_automaticallyRNAi_primary
WBRNAi00033821Inferred_automaticallyRNAi_primary
Expr_patternExpr1023750
Expr1034571
Expr1153346
Expr2009826
Expr2028066
Drives_constructWBCnstr00031393
Construct_productWBCnstr00031393
Microarray_results (20)
Expression_cluster (141)
Interaction (21)
Map_infoMapVPosition4.139Error0.004085
PositivePositive_cloneK01D12Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00024695
WBPaper00038491
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene