WormBase Tree Display for Gene: WBGene00010340
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| WBGene00010340 | SMap | S_parent | Sequence | CHROMOSOME_X | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | slcf-1 | Person_evidence | WBPerson605 | |||||
| Sequence_name | F59F5.1 | ||||||||
| Molecular_name | F59F5.1 | ||||||||
| F59F5.1.1 | |||||||||
| CE41326 | |||||||||
| Other_name | CELE_F59F5.1 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | slcf-1 | ||||||||
| DB_info | Database | AceView | gene | XL147 | |||||
| WormQTL | gene | WBGene00010340 | |||||||
| WormFlux | gene | WBGene00010340 | |||||||
| NDB | locus_tag | CELE_F59F5.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00010340|UniProtKB=G5ECR3 | |||||||
| family | PTHR11360 | ||||||||
| NCBI | gene | 186633 | |||||||
| RefSeq | protein | NM_077361.5 | |||||||
| TrEMBL | UniProtAcc | G5ECR3 | |||||||
| UniProt_GCRP | UniProtAcc | G5ECR3 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 01 Oct 2010 14:24:45 | WBPerson2970 | Name_change | CGC_name | slcf-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | slcf | ||||||||
| Allele (63) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00012371 | ||||||||
| 00012372 | |||||||||
| 00012373 | |||||||||
| 00012374 | |||||||||
| 00012375 | |||||||||
| 00117775 | |||||||||
| 00117776 | |||||||||
| Ortholog (28) | |||||||||
| Paralog | WBGene00003986 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00008214 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00020168 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00015676 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00010834 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00015273 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00021227 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WormBase-Compara | |||||||||
| WBGene00013353 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00017369 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | slcf-1 encodes a plasma membrane transporter that is a member of the conserved monocarboxylate transporter family; loss of SLCF-1 function results in altered mitochondrial metabolism, reactive oxygen species accumulation, and increased lifespan that mimics dietary restriction; an SLCF-1::GFP reporter fusion is expressed in intestinal cells during embryonic, larval and adult stages and localizes to the basolateral plasma membrane. | Paper_evidence | WBPaper00037741 | |||||
| WBPaper00041028 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 15 May 2014 00:00:00 | ||||||||
| Automated_description | Predicted to enable monocarboxylic acid transmembrane transporter activity. Predicted to be involved in monocarboxylic acid transport. Located in basolateral plasma membrane. Expressed in intestine. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F59F5.1 | |||||||
| Corresponding_CDS_history | F59F5.1:wp178 | ||||||||
| Corresponding_transcript | F59F5.1.1 | ||||||||
| Other_sequence | JI221829.1 | ||||||||
| HBC09062_1 | |||||||||
| EX828307.1 | |||||||||
| Acan_isotig19085 | |||||||||
| ACC04198_1 | |||||||||
| Acan_isotig13148 | |||||||||
| ES743270.1 | |||||||||
| Associated_feature | WBsf648482 | ||||||||
| Experimental_info | RNAi_result (25) | ||||||||
| Expr_pattern | Expr9155 | ||||||||
| Expr1013235 | |||||||||
| Expr1152966 | |||||||||
| Expr2015879 | |||||||||
| Expr2034112 | |||||||||
| Drives_construct | WBCnstr00013752 | ||||||||
| WBCnstr00014891 | |||||||||
| WBCnstr00031488 | |||||||||
| Construct_product | WBCnstr00013752 | ||||||||
| WBCnstr00031488 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (85) | |||||||||
| Interaction (14) | |||||||||
| Map_info | Map | X | Position | 2.22549 | Error | 0.000129 | |||
| Positive | Positive_clone | F59F5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031805 | ||||||||
| WBPaper00037741 | |||||||||
| WBPaper00045256 | |||||||||
| WBPaper00045338 | |||||||||
| WBPaper00046800 | |||||||||
| WBPaper00047404 | |||||||||
| WBPaper00062255 | |||||||||
| WBPaper00064057 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
