WormBase Tree Display for Gene: WBGene00010272
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| WBGene00010272 | SMap | S_parent | Sequence | F58G6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | amph-1 | Person_evidence | WBPerson217 | |||||
| Sequence_name | F58G6.1 | ||||||||
| Molecular_name | F58G6.1 | ||||||||
| F58G6.1.1 | |||||||||
| CE03428 | |||||||||
| F58G6.1.2 | |||||||||
| Other_name | CELE_F58G6.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | amph-1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 02 Feb 2007 10:20:45 | WBPerson2970 | Name_change | CGC_name | amph-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | amph | ||||||||
| Allele (61) | |||||||||
| Strain | WBStrain00033163 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (43) | |||||||||
| Structured_description | Automated_description | Predicted to enable phospholipid binding activity. Involved in lipid tube assembly involved in organelle fission; nucleus localization; and nucleus organization. Located in nuclear envelope; perinuclear region of cytoplasm; and recycling endosome. Expressed in several structures, including coelomocyte; gonadal sheath cell; hypodermis; intestinal cell; and pharynx. Human ortholog(s) of this gene implicated in breast carcinoma; centronuclear myopathy 2; and prostate adenocarcinoma. Is an ortholog of human BIN1 (bridging integrator 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0111220 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1052) | ||||
| DOID:3459 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1052) | ||||||
| DOID:2526 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1052) | ||||||
| Molecular_info | Corresponding_CDS | F58G6.1 | |||||||
| Corresponding_transcript | F58G6.1.1 | ||||||||
| F58G6.1.2 | |||||||||
| Other_sequence (36) | |||||||||
| Associated_feature | WBsf652075 | ||||||||
| WBsf652076 | |||||||||
| WBsf997456 | |||||||||
| WBsf1017985 | |||||||||
| WBsf230598 | |||||||||
| WBsf230599 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00106485 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00016018 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00114392 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00098502 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00065623 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00033134 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00049056 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00084418 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr6257 | ||||||||
| Expr8854 | |||||||||
| Expr8855 | |||||||||
| Expr12540 | |||||||||
| Expr1018776 | |||||||||
| Expr1034481 | |||||||||
| Expr1152797 | |||||||||
| Expr2009324 | |||||||||
| Expr2027560 | |||||||||
| Drives_construct | WBCnstr00002089 | ||||||||
| WBCnstr00013564 | |||||||||
| WBCnstr00031539 | |||||||||
| Construct_product | WBCnstr00005951 | ||||||||
| WBCnstr00013564 | |||||||||
| WBCnstr00021614 | |||||||||
| WBCnstr00031539 | |||||||||
| Antibody | WBAntibody00002062 | ||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (119) | |||||||||
| Interaction (78) | |||||||||
| Map_info | Map | IV | Position | 4.34538 | Error | 0.000519 | |||
| Positive | Positive_clone | F58G6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00035466 | ||||||||
| WBPaper00036494 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00042727 | |||||||||
| WBPaper00048576 | |||||||||
| WBPaper00048715 | |||||||||
| WBPaper00051840 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061063 | |||||||||
| WBPaper00064699 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
