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WormBase Tree Display for Gene: WBGene00010057

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Name Class

WBGene00010057SMapS_parentSequenceF54D5
IdentityVersion1
NameSequence_nameF54D5.15
Molecular_name (11)
Other_nameCELE_F54D5.15Accession_evidenceNDBBX284602
Public_nameF54D5.15
DB_infoDatabaseAceViewgene2L850
WormQTLgeneWBGene00010057
WormFluxgeneWBGene00010057
NDBlocus_tagCELE_F54D5.15
NCBIgene174770
RefSeqproteinNM_001381611.1
NM_001381612.2
NM_001027028.4
TrEMBLUniProtAccQ65ZB4
Q65ZB5
Q9XVW8
UniProt_GCRPUniProtAccQ9XVW8
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:51WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (114)
RNASeq_FPKM (74)
Ortholog (24)
Structured_descriptionAutomated_descriptionEnriched in GABAergic neurons; MSaaaaapa; and pharyngeal muscle cell based on microarray and single-cell RNA-seq studies. Is affected by several genes including daf-16; skn-1; and daf-12 based on microarray; tiling array; RNA-seq; and proteomic studies. Is affected by six chemicals including stavudine; Zidovudine; and Oligosaccharides based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: Phosphorylation site.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF54D5.15a
F54D5.15b
F54D5.15c
Corresponding_CDS_historyF54D5.15:wp92
Corresponding_transcriptF54D5.15a.1
F54D5.15b.1
F54D5.15b.2
F54D5.15b.3
F54D5.15c.1
Other_sequenceSR03811
SR05190
CJC01370_1
CV198858.1
JI214650.1
SR03578
Oden_isotig20165
Associated_featureWBsf650591
WBsf650592
WBsf666163
WBsf666164
WBsf666165
WBsf989803
WBsf989804
WBsf989805
WBsf1013263
WBsf1013264
WBsf223960
Experimental_infoRNAi_resultWBRNAi00000705Inferred_automaticallyRNAi_primary
WBRNAi00015618Inferred_automaticallyRNAi_primary
WBRNAi00048311Inferred_automaticallyRNAi_primary
WBRNAi00032789Inferred_automaticallyRNAi_primary
Expr_patternExpr1024482
Expr1034388
Expr1152112
Expr2004149
Expr2022373
Drives_constructWBCnstr00031703
Construct_productWBCnstr00031703
Microarray_results (28)
Expression_clusterWBPaper00024970:GABAergic_neuron_specific
WBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray
WBPaper00042561:smgl-1(RNAi)_upregulated
WBPaper00044736:oscillating_dev_expression
WBPaper00044760:somatic_specific
WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
WBPaper00045417:128Q-huntingtin_downreglated
WBPaper00045861:wdr-5(ok1417)_upregulated
WBPaper00049018:swsn-2.2(RNAi)_downregulated
WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:starvation_regulated_LowSalt
WBPaper00050801:DAF-12_dauer_regulome
WBPaper00050801:DAF-16_dauer_regulome
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00051352:Long-Term-Association-Memory_upregulated
WBPaper00051404:alg-2(ok304)_upregulated
WBPaper00053020:sid-3(ok973)_upregulated
WBPaper00053094:adr-2(ok735)_neuron_upregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053321:mes-2(RNAi)_upregulated_fed-L1_Truseq
WBPaper00053402:cco-1(RNAi)_downregulated
WBPaper00053606:elt-2(ca15)_vs_elt-2(ca15);elt-7(tm840)_upregulated
WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated
WBPaper00053771:down_by_skn-1(RNAi)_at_dpy-7(e88)
WBPaper00054493:hpl-2(tm1489)_upregulated
WBPaper00055354:eat-2(ad1116)_upregulated
WBPaper00055626:pry-1(mu38)_downregulated
WBPaper00055941:atfs-1(et15)_upregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056275:P.aeruginosa_downregulated
WBPaper00056275:P.aeruginosa_downregulated_atf-7(qd22qd130)_dependent
WBPaper00056275:P.aeruginosa_downregulated_pmk-1(km25)_dependent
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056855:his-72(uge40)_upregulated
WBPaper00056868:P.aeruginosa_upregulated_smallRNA
WBPaper00057140:meg-3(tm4259)_meg-4(ax2026)_downregulated
WBPaper00057154:HeatShock_upregulated_mRNA
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058598:spn-4(tm291)_upregulated
WBPaper00058691:cfp-1(tm6369)_upregulated
WBPaper00058691:set-2(bn129)_downregulated
WBPaper00058691:sin-3(tm1276)_upregulated
WBPaper00058711:skn-1(lax188)_upregulated
WBPaper00058948:PA14_downregulated
WBPaper00058969:RIS_depleted
WBPaper00059117:B.subtilis_upregulated
WBPaper00059231:alh-6(lax105)_L4_upregulated
WBPaper00059421:daf-1(m40);daf-3(mgDf90)_downregulated
WBPaper00059421:daf-3(mgDf90)_downregulated
WBPaper00059566:wdr-23(mac32)_upregulated
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00060445:nfki-1(cer1)_upregulated_L4
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060909:atfs-1(cmh15)_upregulated
WBPaper00060909:atfs-1(et18)_downregulated
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061340:Parent_of_g1P_I3
WBPaper00061340:pm3_pm4_pm5
WBPaper00061340:pm6
WBPaper00061340:pm7
WBPaper00061340:pm8
WBPaper00061479:hda-1(ne4752)_upregulated
WBPaper00061527:acy-2-F35C5.11
WBPaper00061818:ELKS-1_interacting
WBPaper00061952:daf-18(nr2037)_upregulated
WBPaper00062156:jmjd-5(zr1234)_upregulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062446:nhr-8(hd117)_upregulated
WBPaper00064071:NHR-49_interacting
WBPaper00064306:Agaro-oligosaccharides_upregulated
WBPaper00064315:mrg-1(qa6200)_upregulated_PGCs
WBPaper00064721:fasn-1(g14)_downregulated_starved
WBPaper00064933:bcf-1(ylf1)_upregulated_transcript
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065373:sek-1(km4)_downregulated_cisplatin
WBPaper00065841:9_0
WBPaper00065841:9_1
WBPaper00065841:9_2
WBPaper00065841:24_0
WBPaper00065841:24_1
WBPaper00065841:26_0
WBPaper00065841:26_1
WBPaper00065841:26_2
WBPaper00066110:tetraploid_vs_diploid_upregulated
cgc4489_group_16
WBPaper00025141:N2_Expressed_Genes
WBPaper00031003:0hr_muscle_depleted
WBPaper00031003:24hr_muscle_depleted
WBPaper00031003:total_muscle_depleted
WBPaper00031532:Larva_Pan_Neuronal_Depleted
WBPaper00032948:FedUp
WBPaper00035227:heat_shock_regulated
WBPaper00040876:mir-35_downregulated
WBPaper00040963:Q100_down
WBPaper00040963:Q200_down
WBPaper00041267:SpaceFlight_Downregulated
WBPaper00042236:flcn-1(ok975)_upregulated
WBPaper00045673:colistin_upregulated
WBPaper00045960:L1-L4-lethargus_upregulated
WBPaper00045960:L4-lethargus_upregulated
WBPaper00046083:oga-1(ok1207)_OP50_downregulated
WBPaper00046083:ogt-1(ok1474)_OP50_downregulated
WBPaper00046083:pmk-1(km25)_OP50_downregulated
WBPaper00047070:N2_UV_downregulated
WBPaper00056330:mrps-5(RNAi)_upregulated
WBPaper00057098:SiO2-nanoparticles_upregulated
[cgc5767]:expression_class_M
[cgc5767]:expression_class_SM
Interaction (38)
Map_infoPositivePositive_cloneF54D5Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionII3.76074
MethodGene