WormBase Tree Display for Gene: WBGene00010045

WBGene00010045 SMap: S_parent: Sequence: F54C9
  Identity: Version: 1
    Name: Sequence_name: F54C9.11
      Molecular_name: F54C9.11
        F54C9.11.1
        CE47974
      Other_name: CELE_F54C9.11 Accession_evidence: NDB BX284602
      Public_name: F54C9.11
    DB_info: Database: AceView gene 2I874
        WormQTL gene WBGene00010045
        WormFlux gene WBGene00010045
        NDB locus_tag CELE_F54C9.11
        Panther gene CAEEL|WormBase=WBGene00010045|UniProtKB=Q20759
          family PTHR14430
        NCBI gene 186226
        RefSeq protein NM_063416.5
        TREEFAM TREEFAM_ID TF313748
        TrEMBL UniProtAcc Q20759
        UniProt_GCRP UniProtAcc Q20759
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:50 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (30)
    RNASeq_FPKM (74)
    GO_annotation: 00069054
      00069055
      00069056
      00069057
      00069058
      00117538
    Ortholog (28)
    Structured_description: Automated_description: Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in exocytosis. Predicted to be located in Golgi to plasma membrane transport vesicle. Expressed in hypodermis; vulA; vulB1; vulB2; and vulval muscle. Is an ortholog of human RAB3IL1 (RAB3A interacting protein like 1) and RAB3IP (RAB3A interacting protein). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F54C9.11
    Corresponding_CDS_history: F54C9.11:wp197
    Corresponding_transcript: F54C9.11.1
    Other_sequence (16)
    Associated_feature: WBsf650342
      WBsf655379
      WBsf717016
      WBsf988772
      WBsf988773
      WBsf1012713
      WBsf1012714
  Experimental_info: RNAi_result: WBRNAi00015590 Inferred_automatically: RNAi_primary
      WBRNAi00048269 Inferred_automatically: RNAi_primary
      WBRNAi00032762 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr127
      Expr4239
      Expr4240
      Expr1027753
      Expr1034378
      Expr1152070
      Expr2004126
      Expr2022350
    Drives_construct: WBCnstr00011848
      WBCnstr00011850
    Construct_product: WBCnstr00011848
      WBCnstr00011850
    Microarray_results (20)
    Expression_cluster: WBPaper00037950:AVA-neuron_embryo_enriched
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:AVE-neuron_embryo_enriched
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_embryo_enriched
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:glr-1(+)-neurons_larva_enriched
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00044736:oscillating_dev_expression
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
      WBPaper00045521:Gender_Neutral
      WBPaper00045934:wrn-1(gk99)_downregulated
      WBPaper00048923:Aging_regulated
      WBPaper00048988:neuron_enriched
      WBPaper00048988:neuron_expressed
      WBPaper00050053:muscle_enriched_Day4
      WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_24-cell-embryo
      WBPaper00050344:PLM-neuron_enriched
      WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050859:upregulated_glh-1(gk100)_vs_control_day1-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00051404:alg-1(gk214)_downregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
      WBPaper00053599:oocyte_vs_mitosis_upregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rifampicin-Allantoin_downregulated
      WBPaper00055482:pmt-2(RNAi)_upregulated
      WBPaper00055565:AVK_enriched
      WBPaper00055941:atfs-1(et15)_upregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056161:male_enriched_siRNA
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00056826:hmc_biased
      WBPaper00056855:his-72(uge40)_upregulated
      WBPaper00057154:HeatShock_upregulated_mRNA
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00059027:neuron-synapses_depleted
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00059471:EGL-43_interacting
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00059763:neuron_expressed
      WBPaper00059987:Wounding_upregulated
      WBPaper00060273:isp-1(qm150)_upregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060459:bcat-1(RNAi)_upregulated
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061340:AIB
      WBPaper00061340:AIM
      WBPaper00061340:ALA
      WBPaper00061340:ALM_BDU
      WBPaper00061340:AVA
      WBPaper00061340:AVB
      WBPaper00061340:AVD
      WBPaper00061340:AVG
      WBPaper00061340:AVH
      WBPaper00061340:AVJ
      WBPaper00061340:AVK
      WBPaper00061340:DD
      WBPaper00061340:hmc
      WBPaper00061340:hmc_homolog
      WBPaper00061340:I5
      WBPaper00061340:PVP
      WBPaper00061340:RIA
      WBPaper00061340:RIC
      WBPaper00061340:RID
      WBPaper00061340:RIM
      WBPaper00061340:RIS
      WBPaper00061340:RIV
      WBPaper00061340:RMD
      WBPaper00061340:RME
      WBPaper00061340:RMED
      WBPaper00061340:SIA
      WBPaper00061340:SIB
      WBPaper00061340:SMD
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061527:unc-44_403-H24G06.1_2859
      WBPaper00061651:RIH_enriched
      WBPaper00061753:csr-1(tor159)_upregulated_25C
      WBPaper00062103:neuron_enriched
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062354:H.zoospora_12h_regulated
      WBPaper00062440:crh-1(n3315)_downregulated
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064306:Agaro-oligosaccharides_upregulated
      WBPaper00064721:fasn-1(g14)_downregulated_starved
      WBPaper00065086:JU1400_N.ferruginous_regulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065258:anchor-cell_enriched
      WBPaper00065749:Heat-Shock_downregulated_N2
      WBPaper00065841:22_0
      WBPaper00065841:52_0
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
      cgc4489_group_23
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026952:class_E
      WBPaper00030839:Larval_Pan_Neuronal
      WBPaper00030985:Erwinia_carotovora_downregulated
      WBPaper00031003:0hr_muscle_depleted
      WBPaper00031003:total_muscle_depleted
      WBPaper00031532:Larva_Pan_Neuronal_Enriched
      WBPaper00038172:crh-1null_down_regulated
      WBPaper00038304:octr-1_regulated
      WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_aging
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00040858:eQTL_regulated_old
      WBPaper00041174:environmental
      WBPaper00041174:genotypic
      WBPaper00041174:genotypic_and_environmental
      WBPaper00042331:a-SWCNTs_downregulated
      WBPaper00046853:AOBr_M.aeruginosa-batch-culture_downregulated
      WBPaper00047070:N2_UV_downregulated
      WBPaper00048989:N2_allantoin_downregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      WBPaper00056330:mrps-5(RNAi)_upregulated
      WBPaper00057098:SiO2-nanoparticles_upregulated
    Interaction (29)
  Map_info: Positive: Positive_clone: F54C9 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: II 0.823109
  Reference: WBPaper00027637
    WBPaper00038491
    WBPaper00055090
    WBPaper00064057
  Method: Gene