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WormBase Tree Display for Gene: WBGene00010033

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Name Class

WBGene00010033SMapS_parentSequenceF54B11
IdentityVersion1
NameSequence_nameF54B11.10
Molecular_nameF54B11.10
F54B11.10.1
CE05934
Other_nameCELE_F54B11.10Accession_evidenceNDBBX284606
Public_nameF54B11.10
DB_infoDatabaseAceViewgeneXO197
WormQTLgeneWBGene00010033
WormFluxgeneWBGene00010033
NDBlocus_tagCELE_F54B11.10
NCBIgene186217
RefSeqproteinNM_077870.2
TrEMBLUniProtAccQ20738
UniProt_GCRPUniProtAccQ20738
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:50WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (19)
RNASeq_FPKM (74)
Ortholog (16)
Structured_descriptionAutomated_descriptionEnriched in several structures, including ABalppppapa; ABplaapaaa; NSM; PLM; and amphid neurons based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including rrf-3; pmk-1; and sek-1 based on microarray; tiling array; and RNA-seq studies. Is affected by twenty-one chemicals including methylmercury hydroxide; 1-methylnicotinamide; and manganese chloride based on RNA-seq and microarray studies.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF54B11.10
Corresponding_transcriptF54B11.10.1
Associated_featureWBsf648681
WBsf663493
WBsf1007654
WBsf1007655
WBsf236585
Experimental_infoRNAi_resultWBRNAi00015563Inferred_automaticallyRNAi_primary
WBRNAi00032734Inferred_automaticallyRNAi_primary
WBRNAi00048217Inferred_automaticallyRNAi_primary
Expr_patternExpr1016021
Expr1034368
Expr1152023
Expr2004106
Expr2022331
Drives_constructWBCnstr00031723
Construct_productWBCnstr00031723
Microarray_results (19)
Expression_clusterWBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00037950:hypodermis_embryo_enriched
WBPaper00037950:hypodermis_embryo_SelectivelyEnriched
WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
WBPaper00040560:hpl-2_embryo_upregulated
WBPaper00040560:hpl-2_L3_upregulated
WBPaper00043945:MeHg_downregulated
WBPaper00044260:nicotic-acid_downregulated
WBPaper00044736:oscillating_dev_expression
WBPaper00044760:somatic_specific
WBPaper00045257:bar-1(ga80)_downregulated
WBPaper00045974:NSM_enriched_totalRNA_tiling
WBPaper00046012:tdp-1(ok803)_upregulated
WBPaper00048611:MnCl2_upregulated
WBPaper00049334:CE_intestine_enriched
WBPaper00049920:Glucose-Diet_upregulated_hyl-2(tm2031)
WBPaper00049954:BPA_upregulated
WBPaper00049954:BPS_upregulated
WBPaper00050344:ASER-neuron_enriched
WBPaper00050344:PLM-neuron_enriched
WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_adult_25C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050801:DPY-21_dauer_regulome
WBPaper00050843:sesamin_downregulated
WBPaper00051265:F4_hrde-1(tm1200)_downregulated
WBPaper00051352:Long-Term-Association-Memory_upregulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053388:dauer_regulated_Cluster3
WBPaper00054758:alg-1(gk204)_upregulated
WBPaper00055013:hmg-3(bar24)_downregulated
WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055354:Rifampicin-Psora_downregulated
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00055971:nhl-2(ok818)_20C_upregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056169:rrf-3(pk1426)_downregulated_L4
WBPaper00056169:rrf-3(pk1426)_upregulated_L1
WBPaper00056290:hsp-6(mg585)_upregulated
WBPaper00056330:glycine_downregulated
WBPaper00056443:DietaryRestriction_upregulated
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056617:adr-1_upregulated_L4_transcript
WBPaper00056809:smn-1(ok355)_downregulated
WBPaper00057041:spc-1(cas971)_upregulated
WBPaper00057041:unc-70(cas983)_upregulated
WBPaper00057068:numr-1(RNAi)_downregulated
WBPaper00057068:numr-1(RNAi)_downregulated_Cadmium
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058691:sin-3(tm1276)_downregulated
WBPaper00059117:B.subtilis_upregulated
WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
WBPaper00059334:sacy-1(depletion)_regulated
WBPaper00059567:olrn-1(ums9)_regulated
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059728:20ug_cholesterol_upregulated
WBPaper00060014:set-2(tm1630)_downregulated
WBPaper00060084:cco-1(RNAi)_downregulated_N2
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060445:ikb-1(nr2027)_downregulated_L4
WBPaper00060445:nfki-1(cer1)_downregulated_L4
WBPaper00060445:nfki-1(cer1)_ikb-1(nr2027)_downregulated_L4
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060909:atfs-1(cmh15)_downregulated
WBPaper00061203:let-418(n3536)_upregulated
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061340:OLL_parent
WBPaper00061340:Parent_of_hyp3_ILsoDx
WBPaper00061340:Seam_cell
WBPaper00061340:T
WBPaper00061341:28C_24h_upregulated
WBPaper00061341:28C_48h_upregulated
WBPaper00061424:Diet_MYb131_upregulated
WBPaper00061439:unc-30(ok613)_upregulated
WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
WBPaper00061527:mlt-9_22518-F33D4.6_14044
WBPaper00061613:human-alpha-Synuclein(A53T)_upregulated
WBPaper00061613:human-amyloid-beta_alpha-Synuclein(A53T)_upregulated
WBPaper00061651:AWC_OFF_enriched
WBPaper00061651:AWC_ON_enriched
WBPaper00061653:alh-4(hj221)_downregulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062440:crh-1(n3315)_downregulated
WBPaper00062446:nhr-8(hd117)_upregulated
WBPaper00062497:xpf-1(tm2842)_upregulated
WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
WBPaper00062672:let-418(n3536)dcp-66(RNAi)_upregulated
WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064661:lpd-3(ok2138)_upregulated
WBPaper00064716:paraquat_upregulated
WBPaper00064933:bcf-1(ylf1)_upregulated_transcript
WBPaper00064999:miR-229-64-65-66_upregulated
WBPaper00065005:sams-3(RNAi)_upregulated
WBPaper00065005:sams-4(RNAi)_upregulated
WBPaper00065096:npr-8(ok1439)_upregulated_Day1_20C
WBPaper00065158:25C_vs_15C_upregulated_AFD
WBPaper00065746:eat-2(ad1113)_downregulated
WBPaper00065749:Heat-Shock_downregulated_N2
WBPaper00065841:35_4
WBPaper00065984:pals-17(syb3980)_downregulated
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066062:xrep-4(lax137)_upregulated
WBPaper00066110:Doxorubicin_upregulated_tetraploid
WBPaper00066110:tetraploid_vs_diploid_upregulated
cgc4489_group_9
WBPaper00024393:strongly_regulated_dauer_genes
WBPaper00025141:N2_Expressed_Genes
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00031003:hlh_1_enriched
WBPaper00032948:FedUp
WBPaper00034739:N2lessDR1350
WBPaper00035084:L2_enriched_AIN-2_IP
WBPaper00035084:L3_enriched_AIN-2_IP
WBPaper00036130:mir-243_up_regulated
WBPaper00036286:Pattern_G
WBPaper00036383:ash-2_L3_regulated
WBPaper00038172:aak-2overexpression_down_regulated
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.5
WBPaper00040858:eQTL_age_regulated_aging
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00040858:eQTL_regulated_developing
WBPaper00040858:eQTL_regulated_old
WBPaper00040963:Q100_down
WBPaper00040963:Q200_down
WBPaper00041002:HF_11d_0.2mM_Up
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041960:daf-16_fasting_upregulated
WBPaper00041960:kgb-1_fasting_upregulated
WBPaper00041960:N2_fasting_upregulated
WBPaper00041960:N2_fasting_upregulated_9hto12h
WBPaper00041960:N2_fasting_upregulated_anytime
WBPaper00046083:oga-1(ok1207)_OP50_downregulated
WBPaper00046083:pmk-1(km25)_OP50_downregulated
WBPaper00046548:dafachronic-acid_upregulated
WBPaper00047070:N2_starvation_downregulated
WBPaper00048989:N2_allantoin_upregulated
WBPaper00048989:N2_rapamycin_upregulated
WBPaper00056330:mrps-5(RNAi)_upregulated
[cgc6390]:Cluster_A
Interaction (26)
Map_infoPositivePositive_cloneF54B11Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionX13.6766
ReferenceWBPaper00065106
MethodGene