WormBase Tree Display for Gene: WBGene00009983
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WBGene00009983 | SMap | S_parent | Sequence | F53F1 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | cut-2 | Paper_evidence | WBPaper00001968 | |||||
Person_evidence | WBPerson52 | ||||||||
Sequence_name | F53F1.5 | ||||||||
Molecular_name | F53F1.5 | ||||||||
F53F1.5.1 | |||||||||
CE10940 | |||||||||
Other_name | vmp-2 | ||||||||
CELE_F53F1.5 | Accession_evidence | NDB | BX284605 | ||||||
Public_name | cut-2 | ||||||||
DB_info | Database | AceView | gene | 5N893 | |||||
WormQTL | gene | WBGene00009983 | |||||||
WormFlux | gene | WBGene00009983 | |||||||
NDB | locus_tag | CELE_F53F1.5 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00009983|UniProtKB=P34682 | |||||||
family | PTHR23261 | ||||||||
NCBI | gene | 179823 | |||||||
RefSeq | protein | NM_073924.5 | |||||||
SwissProt | UniProtAcc | P34682 | |||||||
UniProt_GCRP | UniProtAcc | P34682 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 23 Feb 2011 09:01:26 | WBPerson2970 | Event | Acquires_merge | WBGene00000852 | ||||
Name_change | CGC_name | cut-2 | |||||||
Other_name | vmp-2 | ||||||||
Acquires_merge | WBGene00000852 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | cut | ||||||||
Allele (29) | |||||||||
Legacy_information | [C.elegansII] NMK. Cross-hybridizes to Drosophila vitelline membrane protein gene (pka vmp-2); encodes collagenase-resistant cuticle component, predicted 231 aa secreted protein, repetitious,some similarity to CUT-1. CUT-2 present in cortical layer (all stages), and under alae (dauers). [Lassandro et al. 1994; NA] | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00043939 | ||||||||
00043940 | |||||||||
00043941 | |||||||||
00043942 | |||||||||
Ortholog (20) | |||||||||
Structured_description | Concise_description | cut-2 encodes a secreted protein which is a component of cuticlin, the insoluble residue of nematode cuticles; CUT-2 is expressed during all developmental stages and contributes to the external cortical layer of the cuticle of all larval stages. | Paper_evidence | WBPaper00001493 | |||||
WBPaper00001986 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
WBPerson324 | |||||||||
Date_last_updated | 21 Mar 2011 00:00:00 | ||||||||
Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be located in extracellular region. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F53F1.5 | |||||||
Corresponding_transcript | F53F1.5.1 | ||||||||
Other_sequence (17) | |||||||||
Associated_feature (12) | |||||||||
Experimental_info | RNAi_result | WBRNAi00048135 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00015516 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00015517 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00030253 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00097122 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1021438 | ||||||||
Expr1034353 | |||||||||
Expr1151944 | |||||||||
Expr2010599 | |||||||||
Expr2028839 | |||||||||
Drives_construct | WBCnstr00031765 | ||||||||
Construct_product | WBCnstr00031765 | ||||||||
Antibody | WBAntibody00001504 | ||||||||
WBAntibody00001559 | |||||||||
WBAntibody00001786 | |||||||||
Microarray_results (17) | |||||||||
Expression_cluster (327) | |||||||||
Interaction (125) | |||||||||
Map_info | Map | V | Position | 5.26522 | Error | 0.004073 | |||
Positive | Positive_clone | F53F1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference (11) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |