WormBase Tree Display for Gene: WBGene00009939
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| WBGene00009939 | SMap | S_parent | Sequence | F52F12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 4 | |||||||
| Name | CGC_name | ztf-11 | Person_evidence | WBPerson524 | |||||
| WBPerson1997 | |||||||||
| Sequence_name | F52F12.6 | ||||||||
| Molecular_name | F52F12.6a | ||||||||
| F52F12.6a.1 | |||||||||
| CE24995 | |||||||||
| F52F12.6b | |||||||||
| CE46793 | |||||||||
| F52F12.6b.1 | |||||||||
| Other_name | ekl-2 | Paper_evidence | WBPaper00031487 | ||||||
| CELE_F52F12.6 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | ztf-11 | ||||||||
| DB_info | Database | AceView | gene | 1K482 | |||||
| WormQTL | gene | WBGene00009939 | |||||||
| WormFlux | gene | WBGene00009939 | |||||||
| NDB | locus_tag | CELE_F52F12.6 | |||||||
| NCBI | gene | 172845 | |||||||
| RefSeq | protein | NM_001264316.3 | |||||||
| NM_001264317.3 | |||||||||
| SwissProt | UniProtAcc | O02274 | |||||||
| TREEFAM | TREEFAM_ID | TF317299 | |||||||
| UniProt_GCRP | UniProtAcc | O02274 | |||||||
| OMIM | gene | 613084 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 18 Jul 2005 13:34:00 | WBPerson2970 | Name_change | CGC_name | ekl-2 | ||||
| 3 | 22 Oct 2007 15:16:41 | WBPerson2970 | Name_change | CGC_name | ztf-11 | ||||
| 4 | 20 Feb 2008 16:59:39 | WBPerson2970 | Name_change | Other_name | ztf-11 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ztf | ||||||||
| Allele (70) | |||||||||
| Strain | WBStrain00031537 | ||||||||
| WBStrain00030095 | |||||||||
| WBStrain00030097 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (17) | |||||||||
| Ortholog (40) | |||||||||
| Paralog | WBGene00010867 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Structured_description | Automated_description | Predicted to enable zinc ion binding activity. Involved in several processes, including negative regulation of transcription by RNA polymerase II; neuron differentiation; and positive regulation of cell differentiation. Located in nucleus. Expressed in g1 and head neurons. Human ortholog(s) of this gene implicated in autosomal dominant intellectual developmental disorder 39. Is an ortholog of human MYT1L (myelin transcription factor 1 like). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0070069 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7623) | ||||
| Molecular_info | Corresponding_CDS | F52F12.6a | |||||||
| F52F12.6b | |||||||||
| Corresponding_transcript | F52F12.6a.1 | ||||||||
| F52F12.6b.1 | |||||||||
| Other_sequence | JI169553.1 | ||||||||
| Dviv_isotig18198 | |||||||||
| Dviv_isotig18199 | |||||||||
| Associated_feature (17) | |||||||||
| Gene_product_binds (297) | |||||||||
| Transcription_factor | WBTranscriptionFactor000759 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00082504 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00003743 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00116763 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00000286 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048012 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00070207 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00082618 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr427 | ||||||||
| Expr1020528 | |||||||||
| Expr1034330 | |||||||||
| Expr1151827 | |||||||||
| Expr1200080 | |||||||||
| Expr1200081 | |||||||||
| Expr2018185 | |||||||||
| Expr2036322 | |||||||||
| Drives_construct | WBCnstr00037854 | ||||||||
| Construct_product | WBCnstr00016725 | ||||||||
| WBCnstr00018914 | |||||||||
| WBCnstr00037854 | |||||||||
| Regulate_expr_cluster | WBPaper00057143:ztf-11(RNAi)_downregulated | ||||||||
| WBPaper00057143:ztf-11(RNAi)_upregulated | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (221) | |||||||||
| Interaction (40) | |||||||||
| Map_info | Map | I | Position | 4.05133 | Error | 0.011125 | |||
| Positive | Positive_clone | F52F12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5407 | |||||||
| 5060 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00040002 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00057143 | |||||||||
| WBPaper00057179 | |||||||||
| WBPaper00061738 | |||||||||
| WBPaper00062585 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
