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WormBase Tree Display for Gene: WBGene00009897

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Name Class

WBGene00009897SMapS_parentSequenceF49E12
IdentityVersion2
NameCGC_nameskpo-1Person_evidenceWBPerson3395
Sequence_nameF49E12.1
Molecular_nameF49E12.1
F49E12.1.1
CE03378
Other_nameCELE_F49E12.1Accession_evidenceNDBBX284602
Public_nameskpo-1
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:50WBPerson1971EventImportedInitial conversion from CDS class of WS125
225 Mar 2014 09:31:05WBPerson2970Name_changeCGC_nameskpo-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classskpo
Allele (64)
StrainWBStrain00032135
RNASeq_FPKM (74)
GO_annotation (19)
Ortholog (29)
ParalogWBGene00004256Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00004257Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00008627Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00022743Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00017968Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00015841Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00019970Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00019613Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00016700Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00011530Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
Structured_descriptionAutomated_descriptionEnables peroxidase activity. Involved in defense response to Gram-positive bacterium; determination of adult lifespan; and negative regulation of gene expression. Predicted to be located in extracellular space.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF49E12.1
Corresponding_transcriptF49E12.1.1
Other_sequence (25)
Associated_featureWBsf665785
WBsf665786
WBsf665787
WBsf223491
WBsf223492
Experimental_infoRNAi_resultWBRNAi00015316Inferred_automaticallyRNAi_primary
WBRNAi00047849Inferred_automaticallyRNAi_primary
WBRNAi00032537Inferred_automaticallyRNAi_primary
Expr_patternExpr1011532
Expr1151682
Expr2015834
Expr2034067
Drives_constructWBCnstr00031833
Construct_productWBCnstr00031833
Regulate_expr_clusterWBPaper00061081:skpo-1(ok1640)_downregulated_OG1RF
WBPaper00061081:skpo-1(ok1640)_downregulated_OP50
WBPaper00061081:skpo-1(ok1640)_upregulated_OG1RF
WBPaper00061081:skpo-1(ok1640)_upregulated_OP50
AntibodyWBAntibody00002521
Microarray_results (18)
Expression_cluster (231)
InteractionWBInteraction000104980
WBInteraction000105801
WBInteraction000111411
WBInteraction000111414
WBInteraction000114874
WBInteraction000115633
WBInteraction000121430
WBInteraction000124806
WBInteraction000132992
WBInteraction000133194
WBInteraction000133302
WBInteraction000133470
WBInteraction000133663
WBInteraction000134327
WBInteraction000137540
WBInteraction000137574
WBInteraction000137740
WBInteraction000138596
WBInteraction000139141
WBInteraction000139143
WBInteraction000140747
WBInteraction000141283
WBInteraction000141411
WBInteraction000142496
WBInteraction000143066
WBInteraction000143694
WBInteraction000145573
WBInteraction000146788
WBInteraction000148262
WBInteraction000149703
WBInteraction000150984
WBInteraction000151703
WBInteraction000153239
WBInteraction000156798
WBInteraction000157164
WBInteraction000157679
WBInteraction000159684
WBInteraction000159863
WBInteraction000164966
WBInteraction000172273
WBInteraction000175781
WBInteraction000176418
WBInteraction000182852
WBInteraction000184920
WBInteraction000185035
WBInteraction000186879
WBInteraction000187096
WBInteraction000190673
WBInteraction000193306
WBInteraction000195808
WBInteraction000197791
WBInteraction000197964
WBInteraction000198100
WBInteraction000198158
WBInteraction000202419
WBInteraction000203081
WBInteraction000203690
WBInteraction000203848
WBInteraction000205020
WBInteraction000205101
WBInteraction000205446
WBInteraction000205790
WBInteraction000211188
WBInteraction000211688
WBInteraction000213538
WBInteraction000213952
WBInteraction000214371
WBInteraction000216863
WBInteraction000217712
WBInteraction000219927
WBInteraction000221923
WBInteraction000226450
WBInteraction000226665
WBInteraction000226669
WBInteraction000227416
WBInteraction000228659
WBInteraction000228854
WBInteraction000229893
WBInteraction000230607
WBInteraction000231235
WBInteraction000232025
WBInteraction000232431
WBInteraction000232612
WBInteraction000233627
WBInteraction000236698
WBInteraction000244502
WBInteraction000247945
WBInteraction000251056
WBInteraction000251304
WBInteraction000251622
WBInteraction000252600
WBInteraction000253313
WBInteraction000255926
WBInteraction000256758
WBInteraction000256800
WBInteraction000258439
WBInteraction000258614
WBInteraction000259877
WBInteraction000260892
WBInteraction000264207
WBInteraction000264512
WBInteraction000266606
WBInteraction000267664
WBInteraction000269550
WBInteraction000270342
WBInteraction000271146
WBInteraction000271932
WBInteraction000274888
WBInteraction000274977
WBInteraction000278322
WBInteraction000278403
WBInteraction000278617
WBInteraction000282766
WBInteraction000284376
WBInteraction000285046
WBInteraction000286637
WBInteraction000288302
WBInteraction000292946
WBInteraction000293136
WBInteraction000294832
WBInteraction000297194
WBInteraction000302667
WBInteraction000307705
WBInteraction000308206
WBInteraction000308477
WBInteraction000308627
WBInteraction000309247
WBInteraction000313048
WBInteraction000314834
WBInteraction000317944
WBInteraction000319881
WBInteraction000321236
WBInteraction000328213
WBInteraction000328537
WBInteraction000329502
WBInteraction000333222
WBInteraction000333973
WBInteraction000335176
WBInteraction000342804
WBInteraction000343096
WBInteraction000345071
WBInteraction000346851
WBInteraction000351102
WBInteraction000352027
WBInteraction000353461
WBInteraction000353615
WBInteraction000353845
WBInteraction000354001
WBInteraction000355030
WBInteraction000359215
WBInteraction000363810
WBInteraction000365310
WBInteraction000368278
WBInteraction000369704
WBInteraction000370689
WBInteraction000373622
WBInteraction000374995
WBInteraction000375909
WBInteraction000379739
WBInteraction000381745
WBInteraction000382227
WBInteraction000382866
WBInteraction000383769
WBInteraction000389143
WBInteraction000389252
WBInteraction000389869
WBInteraction000396283
WBInteraction000396381
WBInteraction000400570
WBInteraction000402056
WBInteraction000404089
WBInteraction000404385
WBInteraction000404796
WBInteraction000406878
WBInteraction000407749
WBInteraction000408491
WBInteraction000410087
WBInteraction000411706
WBInteraction000412740
WBInteraction000414798
WBInteraction000415694
WBInteraction000416830
WBInteraction000420164
WBInteraction000422983
WBInteraction000424576
WBInteraction000429480
WBInteraction000431264
WBInteraction000431321
WBInteraction000432815
WBInteraction000435094
WBInteraction000436512
WBInteraction000436878
WBInteraction000436952
WBInteraction000438883
WBInteraction000442149
WBInteraction000442490
WBInteraction000443443
WBInteraction000443962
WBInteraction000444327
WBInteraction000449030
WBInteraction000449619
WBInteraction000452312
WBInteraction000452335
WBInteraction000453891
WBInteraction000453964
WBInteraction000454937
WBInteraction000456768
WBInteraction000456783
WBInteraction000459415
WBInteraction000461138
WBInteraction000462222
WBInteraction000521037
WBInteraction000521314
WBInteraction000552074
WBInteraction000552426
WBInteraction000552661
WBInteraction000565248
WBInteraction000585883
Map_infoMapIIPosition0.769953
PositivePositive_cloneF49E12Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00038491
WBPaper00043278
WBPaper00044963
WBPaper00055090
WBPaper00056090
WBPaper00061081
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene