WormBase Tree Display for Gene: WBGene00009896
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WBGene00009896 | SMap | S_parent | Sequence | CHROMOSOME_IV | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | scl-3 | Person_evidence | WBPerson261 | |||
Sequence_name | F49E11.11 | ||||||
Molecular_name | F49E11.11 | ||||||
F49E11.11.1 | |||||||
CE05907 | |||||||
Other_name | CELE_F49E11.11 | Accession_evidence | NDB | BX284604 | |||
Public_name | scl-3 | ||||||
DB_info | Database | AceView | gene | 4N825 | |||
WormQTL | gene | WBGene00009896 | |||||
WormFlux | gene | WBGene00009896 | |||||
NDB | locus_tag | CELE_F49E11.11 | |||||
Panther | gene | CAEEL|WormBase=WBGene00009896|UniProtKB=G5EF50 | |||||
family | PTHR10334 | ||||||
NCBI | gene | 178252 | |||||
RefSeq | protein | NM_070103.5 | |||||
TREEFAM | TREEFAM_ID | TF352352 | |||||
TrEMBL | UniProtAcc | G5EF50 | |||||
UniProt_GCRP | UniProtAcc | G5EF50 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | scl | ||||||
Allele (22) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00017421 | ||||||
Ortholog (58) | |||||||
Paralog (33) | |||||||
Structured_description | Concise_description | scl-3 encodes a predicted extracellular protein that is a member of the C. elegans family of SCP/TAPS domain-containing proteins. | Curator_confirmed | WBPerson1843 | |||
Date_last_updated | 26 Mar 2008 00:00:00 | ||||||
Automated_description | Predicted to be located in extracellular space. Expressed in g1AL; g1AR; g1P; g2L; and g2R. Is an ortholog of human GLIPR1 (GLI pathogenesis related 1) and R3HDML (R3H domain containing like). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F49E11.11 | |||||
Corresponding_transcript | F49E11.11.1 | ||||||
Other_sequence | CJC05071_1 | ||||||
CJC05568_1 | |||||||
CR07651 | |||||||
CJC00015_3 | |||||||
CJC02065_1 | |||||||
CJC00015_2 | |||||||
CRC01268_1 | |||||||
Acan_isotig07253 | |||||||
CJC07783_1 | |||||||
CJC04091_1 | |||||||
Associated_feature (5) | |||||||
Experimental_info | RNAi_result | WBRNAi00015307 | Inferred_automatically | RNAi_primary | |||
WBRNAi00032529 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00047839 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr10172 | ||||||
Expr1012647 | |||||||
Expr1151673 | |||||||
Expr2015639 | |||||||
Expr2033874 | |||||||
Drives_construct | WBCnstr00015503 | ||||||
WBCnstr00031834 | |||||||
Construct_product | WBCnstr00031834 | ||||||
Microarray_results (17) | |||||||
Expression_cluster (169) | |||||||
Interaction (11) | |||||||
Map_info | Map | IV | Position | 7.66415 | Error | 0.012677 | |
Positive | Positive_clone | F49E11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00038491 | ||||||
WBPaper00041256 | |||||||
WBPaper00055090 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |