WormBase Tree Display for Gene: WBGene00009895
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| WBGene00009895 | SMap | S_parent | Sequence | F49E11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | scl-2 | Person_evidence | WBPerson261 | |||||
| Sequence_name | F49E11.10 | ||||||||
| Molecular_name | F49E11.10a | ||||||||
| F49E11.10a.1 | |||||||||
| CE05906 | |||||||||
| F49E11.10b | |||||||||
| CE47807 | |||||||||
| F49E11.10b.1 | |||||||||
| Other_name | CELE_F49E11.10 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | scl-2 | ||||||||
| DB_info | Database | AceView | gene | 4N823 | |||||
| WormQTL | gene | WBGene00009895 | |||||||
| WormFlux | gene | WBGene00009895 | |||||||
| NDB | locus_tag | CELE_F49E11.10 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00009895|UniProtKB=Q20603 | |||||||
| family | PTHR10334 | ||||||||
| NCBI | gene | 178251 | |||||||
| RefSeq | protein | NM_001276874.3 | |||||||
| NM_070102.7 | |||||||||
| TrEMBL | UniProtAcc | Q20603 | |||||||
| J7RNK2 | |||||||||
| UniProt_GCRP | UniProtAcc | Q20603 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 07 Nov 2007 11:51:23 | WBPerson2970 | Name_change | CGC_name | scl-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | scl | ||||||||
| Allele (33) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00023945 | ||||||||
| Ortholog (69) | |||||||||
| Paralog (32) | |||||||||
| Structured_description | Concise_description | scl-2 encodes a predicted extracellular protein that is a member of the C. elegans family of SCP/TAPS (sperm coating protein/Tpx-1/Ag5/PR-1/Sc7) domain-containing proteins; an scl-2 deletion mutation, tm2428, is reported to be homozygous viable. | Curator_confirmed | WBPerson1843 | |||||
| Date_last_updated | 23 Mar 2012 00:00:00 | ||||||||
| Automated_description | Predicted to be located in extracellular space. Expressed in intestinal cell. Is an ortholog of human PI15 (peptidase inhibitor 15). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F49E11.10a | |||||||
| F49E11.10b | |||||||||
| Corresponding_transcript | F49E11.10a.1 | ||||||||
| F49E11.10b.1 | |||||||||
| Other_sequence | CJC02065_2 | ||||||||
| BU666538.1 | |||||||||
| PPC04507_1 | |||||||||
| MA02946 | |||||||||
| NAC01088_1 | |||||||||
| MI00562 | |||||||||
| CBC05705_1 | |||||||||
| MIC00280_1 | |||||||||
| Associated_feature | WBsf646506 | ||||||||
| WBsf229373 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00047837 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00007439 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032528 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9962 | ||||||||
| Expr1011552 | |||||||||
| Expr1151672 | |||||||||
| Expr2015638 | |||||||||
| Expr2033873 | |||||||||
| Drives_construct | WBCnstr00014975 | ||||||||
| WBCnstr00031835 | |||||||||
| Construct_product | WBCnstr00031835 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (426) | |||||||||
| Interaction (226) | |||||||||
| Map_info | Map | IV | Position | 7.63347 | Error | 0.014851 | |||
| Positive | Positive_clone | F49E11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00040135 | |||||||||
| WBPaper00040808 | |||||||||
| WBPaper00041874 | |||||||||
| WBPaper00044718 | |||||||||
| WBPaper00046040 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00059839 | |||||||||
| WBPaper00061938 | |||||||||
| WBPaper00065331 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
