WormBase Tree Display for Gene: WBGene00009840

WBGene00009840 SMap: S_parent: Sequence: F47H4
  Identity: Version: 2
    Name: CGC_name: fbxa-189 Person_evidence: WBPerson655
      Sequence_name: F47H4.9
      Molecular_name: F47H4.9
        F47H4.9.1
        CE20826
      Other_name: CELE_F47H4.9 Accession_evidence: NDB BX284605
      Public_name: fbxa-189
    DB_info: Database: AceView gene 5R827
        WormQTL gene WBGene00009840
        WormFlux gene WBGene00009840
        NDB locus_tag CELE_F47H4.9
        Panther gene CAEEL|WormBase=WBGene00009840|UniProtKB=Q9XU28
          family PTHR23015
        NCBI gene 185955
        RefSeq protein NM_074991.2
        TREEFAM TREEFAM_ID TF322006
        TrEMBL UniProtAcc Q9XU28
        UniProt_GCRP UniProtAcc Q9XU28
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:50 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 01 Mar 2007 11:55:19 WBPerson2970 Name_change: CGC_name: fbxa-189
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: fbxa
    Allele (120)
    RNASeq_FPKM (74)
    Ortholog (57)
    Paralog (224)
    Structured_description: Concise_description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. Paper_evidence: WBPaper00012854
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enriched in several structures, including Z1.p; intestine; male distal tip cell; neurons; and somatic gonad precursor based on tiling array and RNA-seq studies. Is affected by several genes including daf-16; daf-2; and daf-12 based on microarray; tiling array; RNA-seq; and proteomic studies. Is affected by seventeen chemicals including methylmercuric chloride; bisphenol A; and sesamin based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Mos1 transposase, HTH domain; FTH domain; HTH domain in Mos1 transposase; F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; and F-box A protein FB224. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F47H4.9
    Corresponding_transcript: F47H4.9.1
  Experimental_info: RNAi_result: WBRNAi00015224 Inferred_automatically: RNAi_primary
      WBRNAi00047707 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1025966
      Expr1151542
      Expr2011506
      Expr2029743
    Drives_construct: WBCnstr00031880
    Construct_product: WBCnstr00031880
    Microarray_results (16)
    Expression_cluster (191)
    Interaction: WBInteraction000191170
      WBInteraction000228388
      WBInteraction000314611
      WBInteraction000330573
      WBInteraction000392669
      WBInteraction000412510
      WBInteraction000435133
      WBInteraction000444606
      WBInteraction000453939
      WBInteraction000578773
  Map_info: Map: V Position: 12.8798 Error: 0.001434
    Positive: Positive_clone: F47H4 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00012854
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene