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WormBase Tree Display for Gene: WBGene00009709

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Name Class

WBGene00009709SMapS_parentSequenceF44G3
IdentityVersion5
NameCGC_namefbxa-144Person_evidenceWBPerson655
Sequence_nameF44G3.8
Molecular_nameF44G3.8b
F44G3.8b.1
CE44755
F44G3.8c
Other_nameCELE_F44G3.8Accession_evidenceNDBBX284605
Public_namefbxa-144
DB_infoDatabaseAceViewgene5Q606
WormQTLgeneWBGene00009709
WormFluxgeneWBGene00009709
NDBlocus_tagCELE_F44G3.8
PanthergeneCAEEL|WormBase=WBGene00009709|UniProtKB=D5MCV2
familyPTHR23015
NCBIgene185756
RefSeqproteinNM_001269769.2
NR_070066.1
TrEMBLUniProtAccD5MCV2
UniProt_GCRPUniProtAccD5MCV2
RNAcentralURSidURS000013CC16
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:50WBPerson1971EventImportedInitial conversion from CDS class of WS125
207 Nov 2005 18:17:17WBPerson1983EventSplit_intoWBGene00044659
307 Nov 2005 18:17:32WBPerson1983EventSplit_intoWBGene00044660
407 Nov 2005 18:17:45WBPerson1983EventSplit_intoWBGene00044661
501 Mar 2007 11:55:18WBPerson2970Name_changeCGC_namefbxa-144
Split_intoWBGene00044659
WBGene00044660
WBGene00044661
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classfbxa
Allele (112)
RNASeq_FPKM (74)
OrthologWBGene00071797Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00071800Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00080375Caenorhabditis remaneiFrom_analysisInparanoid_8
WBGene00084134Caenorhabditis remaneiFrom_analysisInparanoid_8
WBGene00085145Caenorhabditis remaneiFrom_analysisInparanoid_8
WBGene00078863Caenorhabditis remaneiFrom_analysisInparanoid_8
chrIV_pilon.g9950Caenorhabditis elegansFrom_analysisWormBase-Compara
Paralog (217)
Structured_descriptionConcise_descriptionThis gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.Paper_evidenceWBPaper00012854
Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionEnriched in ALM; AVA; and PLM based on tiling array and microarray studies. Is affected by several genes including daf-16; hsf-1; and eat-2 based on microarray and RNA-seq studies. Is affected by nine chemicals including methylmercuric chloride; Zidovudine; and allantoin based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Domain of unknown function DUF38/FTH, Caenorhabditis species; FTH domain; and F-box A protein FB224.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF44G3.8b
Corresponding_CDS_historyF44G3.8:wp150
F44G3.8:wp195
F44G3.8a:wp261
Corresponding_transcriptF44G3.8c
F44G3.8b.1
Experimental_infoRNAi_resultWBRNAi00047335Inferred_automaticallyRNAi_primary
Expr_patternExpr1024073
Expr1151188
Expr2011479
Drives_constructWBCnstr00031977
Construct_productWBCnstr00031977
Microarray_results (13)
Expression_cluster (82)
Map_infoMapVPosition9.79035Error0.003271
PositivePositive_cloneF44G3Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00012854
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene